webpac2/trunk/run.pl

#!/usr/bin/perl -w

use strict;

use Cwd qw/abs_path/;
use File::Temp qw/tempdir/;
use lib './lib';

use WebPAC::Common 0.02;
use WebPAC::Parser 0.08;
use WebPAC::Input 0.16;
use WebPAC::Store 0.15;
use WebPAC::Normalize 0.22;
#use WebPAC::Output::TT;
use WebPAC::Validate 0.11;
use WebPAC::Output::MARC;
use WebPAC::Config;
use Getopt::Long;
use File::Path;
use Time::HiRes qw/time/;
use File::Slurp;
use Data::Dump qw/dump/;
use Storable qw/dclone/;
use Pod::Usage qw/pod2usage/;
use LWP::Simple qw//;

use POSIX ":sys_wait_h"; # imports WNOHANG

=head1 NAME

run.pl - start WebPAC indexing

B<this command will probably go away. Don't get used to it!>

=head1 OPTIONS

=over 4

=item --offset 42

start loading (all) databases at offset 42

=item --limit 100

limit loading to 100 records

=item --clean

remove database and Hyper Estraier index before indexing

=item --only=database_name/input_filter

reindex just single database (legacy name is --one)

C</input_filter> is optional part which can be C<name>
or C<type> from input

=item --config conf/config.yml

path to YAML configuration file

=item --stats

disable indexing, modify_* in configuration and dump statistics about field
and subfield usage for each input

=item --validate path/to/validation_file

turn on extra validation of imput records, see L<WebPAC::Validation>

You can use special variables C<$database> and $C<$input> in this parametar
like C<--validate 'conf/validate/$database-$input'> to construct filename

=item --validate-delimiters path/to/validate_delimiters_file

this option is used with C<--validate> to turn on extra validation of
delimiters. If file is non existant, it will be created on first run.

=item --marc-generate

Generate MARC file. This will automatically be on if file contains C<marc*> directives.
You can use this option as C<--no-marc-generate> to disable MARC generation.

=item --marc-lint

By default turned on if normalisation file has C<marc*> directives. You can disable lint
messages with C<--no-marc-lint>.

=item --marc-dump

Force dump or input and marc record for debugging.

=item --parallel 4

Run databases in parallel (aproximatly same as number of processors in
machine if you want to use full load)

=item --only-links

Create just links

=item --merge

Create merged index of databases which have links

=item --mirror http://www.example.com

Tries to download input path files from mirror URI

=back

=cut

my $offset;
my $limit;

my $clean = 0;
my $config_path;
my $debug = 0;
my $only_filter;
my $stats = 0;
my $validate_path;
my $validate_delimiters_path;
my $marc_generate = 1;
my $marc_lint = 1;
my $marc_dump = 0;
my $parallel = 0;
my $only_links = 0;
my $merge = 0;
my $mirror;
my $help;

my $log = _new WebPAC::Common()->_get_logger();

GetOptions(
        "limit=i" => \$limit,
        "offset=i" => \$offset,
        "clean" => \$clean,
        "one=s" => \$only_filter,
        "only=s" => \$only_filter,
        "config=s" => \$config_path,
        "debug+" => \$debug,
        "stats" => \$stats,
        "validate=s" => \$validate_path,
        "validate-delimiters=s" => \$validate_delimiters_path,
        "marc-generate!" => \$marc_generate,
        "marc-lint!" => \$marc_lint,
        "marc-dump!" => \$marc_dump,
        "parallel=i" => \$parallel,
        "only-links!" => \$only_links,
        "merge" => \$merge,
        "mirror=s" => \$mirror,
        "help" => \$help,
);

$marc_generate = 0 if ( $validate_delimiters_path );

pod2usage(-verbose => 2) if ($help);

my $config = new WebPAC::Config( path => $config_path );

WebPAC::Normalize::_debug( $debug - 1 ) if $debug > 1;

#print "config = ",dump($config) if ($debug);

die "no databases in config file!\n" unless ($config->databases);

$log->info( "-" x 79 );

my $log_file = 'log';

if (-e $log_file ) {    # && -s $log_file > 5 * 1024 * 1024) {
        $log->info("moved old log with ", -s $log_file, " bytes to '${log_file}.old'");
        rename $log_file, "${log_file}.old" || $log->logwarn("can't rename $log_file to ${log_file}.old: $!");
}

my $estcmd_fh;
my $estcmd_path = './estcmd-merge.sh';
if ($merge) {
        open($estcmd_fh, '>', $estcmd_path) || $log->logdie("can't open $estcmd_path: $!");
        print $estcmd_fh 'cd /data/estraier/_node/ || exit 1',$/;
        print $estcmd_fh 'sudo /etc/init.d/hyperestraier stop',$/;
        $log->info("created merge batch file $estcmd_path");
}

my $validate;
$validate = new WebPAC::Validate(
        delimiters => $config->webpac('delimiters'),
) if ($validate_path || $validate_delimiters_path);

my $use_indexer = $config->use_indexer;
$stats ||= $validate;
if ($stats) {
        $log->debug("disabled indexing for stats collection");
        $use_indexer = undef;
} elsif ( $use_indexer ) {
        $log->info("using $use_indexer indexing engine...");
}

# parse normalize files and create source files for lookup and normalization

my ($only_database,$only_input) = split(m#/#, $only_filter) if $only_filter;

my $parser = new WebPAC::Parser(
        config => $config,
        only_database => $only_database,
        only_input => $only_input,
);

my $total_rows = 0;
my $start_t = time();

my @links;

if ($parallel) {
        eval 'use Proc::Queue size => 1;';
        die $@ if $@;
        $log->info("Using $parallel processes for speedup");
        Proc::Queue::size($parallel);
}

sub create_ds_config {
        my ($db_config, $database, $input, $mfn) = @_;
        my $c = dclone( $db_config );
        $c->{_} = $database || $log->logconfess("need database");
        $c->{_mfn} = $mfn || $log->logconfess("need mfn");
        $c->{input} = $input || $log->logconfess("need input");
        return $c;
}

foreach my $database ( sort keys %{ $config->databases } ) {
        my $db_config = $config->databases->{$database};

        next if ($only_database && $database !~ m/$only_database/i);

        if ($parallel) {
                my $f=fork;
                if(defined ($f) and $f==0) {
                        $log->info("Created processes $$ for speedup");
                } else {
                        next;
                }
        }

        my $indexer;
        if ($use_indexer && $parser->have_rules( 'search', $database )) {

                my $cfg_name = $use_indexer;
                $cfg_name =~ s/\-.*$//;

                my $indexer_config = $config->get( $cfg_name ) || $log->logdie("can't find '$cfg_name' part in confguration");
                $indexer_config->{database} = $database;
                $indexer_config->{clean} = $clean;
                $indexer_config->{label} = $db_config->{name};

                # force clean if database has links
                $indexer_config->{clean} = 1 if ($db_config->{links});

                if ($use_indexer eq 'hyperestraier') {

                        # open Hyper Estraier database
                        require WebPAC::Output::Estraier;
                        $indexer = new WebPAC::Output::Estraier( %{ $indexer_config } );
                
                } elsif ($use_indexer eq 'hyperestraier-native') {

                        # open Hyper Estraier database
                        require WebPAC::Output::EstraierNative;
                        $indexer = new WebPAC::Output::EstraierNative( %{ $indexer_config } );

                } elsif ($use_indexer eq 'kinosearch') {

                        die "no longer supported";

                } else {
                        $log->logdie("unknown use_indexer: $use_indexer");
                }

                $log->logdie("can't continue without valid indexer") unless ($indexer);
        }


        #
        # store Hyper Estraier links to other databases
        #
        if (ref($db_config->{links}) eq 'ARRAY' && $use_indexer) {
                foreach my $link (@{ $db_config->{links} }) {
                        if ($use_indexer eq 'hyperestraier') {
                                if ($merge) {
                                        print $estcmd_fh 'sudo -u www-data estcmd merge ' . $database . ' ' . $link->{to},$/;
                                } else {
                                        $log->info("saving link $database -> $link->{to} [$link->{credit}]");
                                        push @links, sub {
                                                $log->info("adding link $database -> $link->{to} [$link->{credit}]");
                                                $indexer->add_link(
                                                        from => $database,
                                                        to => $link->{to},
                                                        credit => $link->{credit},
                                                );
                                        };
                                }
                        } else {
                                $log->warn("NOT IMPLEMENTED WITH $use_indexer: adding link $database -> $link->{to} [$link->{credit}]");
                        }
                }
        }
        next if ($only_links);


        #
        # now WebPAC::Store
        #
        my $store = new WebPAC::Store({
                debug => $debug,
        });


        #
        # prepare output
        #
        my @outputs = force_array( $db_config->{output}, sub {
                $log->error("Database $database doesn't have any outputs defined. Do you want to remove it from configuration?" );
        } );

        my @output_modules;

        foreach my $output ( @outputs ) {

#warn '## output = ',dump( $output );

                my $module = $output->{module} || $log->logdie("need module in output section of $database");
                $module = 'WebPAC::Output::' . $module unless $module =~ m/::/;
        
                $log->debug("loading output module $module");
                eval "require $module";

                # add database to arugemnts for output filter
                $output->{database} = $database;
                $output->{clean} = $clean;

                $log->debug("calling $module->new(",dump( $output ),")");
                my $out = new $module->new( $output );
                if ( $out->init ) {
                        push @output_modules, $out;
                } else {
                        $log->warn("SKIPPED $module");
                }
        }


        #
        # now, iterate through input formats
        #


        my @inputs = force_array( $db_config->{input}, sub {
                $log->info("database $database doesn't have inputs defined");
        } );

        if ( -e 'out/debug' ) { # FIXME flag?
                my $out;
                foreach my $i ( @inputs ) {
                        warn dump( $i );
                        next unless defined $i->{normalize};
                        warn dump( $i->{normalize} );
                        foreach my $normalize ( @{ $i->{normalize} } ) {
                                my $path = $normalize->{path};
                                $out .= qq/\n##\n## $path\n##\n\n/;
                                $out .= read_file( $path );
                        }
                }
                my $all = "out/debug/all-normalize.pl";
                write_file( $all, $out );
                warn "### all normalize for this input saved to: $all";
        };

        foreach my $input (@inputs) {

                my $input_name = $input->{name} || $log->logdie("input without a name isn't valid: ",dump($input));

                if ( $input->{skip} ) {
                        $log->info("skip $input_name");
                        next;
                }

                next if ($only_input && ($input_name !~ m#$only_input#i && $input->{type} !~ m#$only_input#i));

                my $type = lc($input->{type});

                # FIXME check if input module exists
                my $input_module = $input->{module};

                if ( ! $input_module ) {
                        if ( grep(/$type/, $config->webpac('inputs')) ) {
                                $input_module = $config->webpac('inputs')->{$type};
                        } else {
                                $log->logdie("I know only how to handle input types ", join(",", $config->webpac('inputs') ), " not '$type'!" );
                        }
                }

                my @lookups = $parser->have_lookup_create($database, $input);

                $log->info("working on $database/$input_name with $input_module on $input->{path}",
                        @lookups ? " creating lookups: ".join(", ", @lookups) : ""
                );

                if ($stats) {
                        # disable modification of records if --stats is in use
                        delete($input->{modify_records});
                        delete($input->{modify_file});
                }

                if ( $mirror ) {
                        my $path = $input->{path} || die "no input path in ",dump( $input );

                        my $base = $path;
                        $base =~ s{/[^/]+$}{};
                        mkpath $base unless -e $base;

                        my $rc = LWP::Simple::mirror( "$mirror/$path", $path );
                        if (LWP::Simple::is_error( $rc )) {
                                die "can't mirror $mirror/$path -> $path [$rc]";
                        } else {
                                $log->info( "mirror ", $path, " [$rc] ", -s $path, " bytes" );
                        }
                        
                }

                my $input_db = new WebPAC::Input(
                        module => $input_module,
                        limit => $limit || $input->{limit},
                        offset => $offset,
                        recode => $input->{recode},
                        stats => $stats,
                        modify_records => $input->{modify_records},
                        modify_file => $input->{modify_file},
                        input_config => $input,
                );
                $log->logdie("can't create input using $input_module") unless ($input);

                if (defined( $input->{lookup} )) {
                        $log->warn("$database/$input_name has depriciated lookup definition, removing it...");
                        delete( $input->{lookup} );
                }

                my $lookup_coderef;

                if (@lookups) {

                        my $rules = $parser->lookup_create_rules($database, $input) || $log->logdie("no rules found for $database/$input");

                        $lookup_coderef = sub {
                                my $rec = shift || die "need rec!";
                                my $mfn = $rec->{'000'}->[0] || die "need mfn in 000";

                                WebPAC::Normalize::data_structure(
                                        row => $rec,
                                        rules => $rules,
                                        config => create_ds_config( $db_config, $database, $input, $mfn ),
                                );

                                #warn "current lookup: ", dump(WebPAC::Normalize::_get_lookup());
                        };

                        WebPAC::Normalize::_set_lookup( undef );

                        $log->debug("created lookup_coderef using:\n$rules");

                };

                my $lookup_jar;

                my $maxmfn = $input_db->open(
                        path => $input->{path},
                        input_encoding => $input->{encoding},   # database encoding
                        lookup_coderef => $lookup_coderef,
                        lookup => $lookup_jar,
                        %{ $input },
                        load_row => sub {
                                my $a = shift;
                                return $store->load_row(
                                        database => $database,
                                        input => $input_name,
                                        id => $a->{id},
                                );
                        },
                        save_row => sub {
                                my $a = shift;
                                return $store->save_row(
                                        database => $database,
                                        input => $input_name,
                                        id => $a->{id},
                                        row => $a->{row},
                                );
                        },

                );

                my $lookup_data = WebPAC::Normalize::_get_lookup();

                if (defined( $lookup_data->{$database}->{$input_name} )) {
                        $log->debug("created following lookups: ", sub { dump( $lookup_data ) } );

                        foreach my $key (keys %{ $lookup_data->{$database}->{$input_name} }) {
                                $store->save_lookup(
                                        database => $database,
                                        input => $input_name,
                                        key => $key,
                                        data => $lookup_data->{$database}->{$input_name}->{$key},
                                );
                        }
                }

                my $report_fh;
                if ($stats || $validate) {
                        my $out_report = 'out/report'; # FIXME move to config
                        mkpath $out_report unless -e $out_report;
                        my $path = "$out_report/${database}-${input_name}.txt";
                        open($report_fh, '>', $path) || $log->logdie("can't open $path: $!");

                        print $report_fh "Report for database '$database' input '$input_name' records ",
                                $offset || 1, "-", $limit || $input->{limit} || $maxmfn, "\n\n";
                        $log->info("Generating report file $path");

                        if ( $validate ) {
                                $validate->read_validate_file( $validate->fill_in( $validate_path, database => $database, input => $input_name ) ) if ( $validate_path );
                                $validate->read_validate_delimiters_file( $validate->fill_in( $validate_delimiters_path, database => $database, input => $input_name ) ) if ( $validate_delimiters_path );
                        }
                }

                my $marc;
                if ($marc_generate && $parser->have_rules( 'marc', $database, $input_name )) {
                        
                        my $out_marc = 'out/marc'; # FIXME move to config
                        mkpath $out_marc unless -e $out_marc;

                        $marc = new WebPAC::Output::MARC(
                                path => "$out_marc/${database}-${input_name}.marc",
                                lint => $marc_lint,
                                dump => $marc_dump,
                        );
                }

                my $rules = $parser->normalize_rules($database,$input_name);
                $log->logwarn("no normalize rules for $database/$input_name") unless $rules;

                $log->debug("parsed normalize rules:\n$rules");

                # reset position in database
                $input_db->seek(1);

                # generate name of config key for indexer (strip everything after -)
                my $indexer_config = $use_indexer;
                $indexer_config =~ s/^(\w+)-?.*$/$1/g if ($indexer_config);

                my $lookup_hash;
                my $depends = $parser->depends($database,$input_name);
        
                if ($depends) {
                        $log->debug("$database/$input_name depends on: ", dump($depends)) if ($depends);
                        $log->logdie("parser->depends didn't return HASH") unless (ref($depends) eq 'HASH');

                        foreach my $db (keys %$depends) {
                                foreach my $i (keys %{$depends->{$db}}) {
                                        foreach my $k (keys %{$depends->{$db}->{$i}}) {
                                                my $t = time();
                                                $log->debug("loading lookup $db/$i");
                                                $lookup_hash->{$db}->{$i}->{$k} = $store->load_lookup(
                                                        database => $db,
                                                        input => $i,
                                                        key => $k,
                                                );
                                                $log->debug(sprintf("lookup $db/$i took %.2fs", time() - $t));
                                        }
                                }
                        }

                        $log->debug("lookup_hash = ", sub { dump( $lookup_hash ) });
                }


                # setup input name for all output filters
                foreach my $out ( @output_modules ) {
                        if ( $out->can('input') ) {
                                $out->input( $input_name );
                        } else {
                                $log->warn("output filter ",ref($out)," doesn't support input name");
                        }
                }


                foreach my $pos ( 0 ... $input_db->size ) {

                        my $row = $input_db->fetch || next;

                        $total_rows++;

                        my $mfn = $row->{'000'}->[0];

                        if (! $mfn || $mfn !~ m{^\d+$}) {
                                $log->warn("record $pos doesn't have valid MFN but '$mfn', using $pos");
                                $mfn = $pos;
                                push @{ $row->{'000'} }, $pos;
                        }


                        if ($validate) {
                                if ( my $errors = $validate->validate_rec( $row, $input_db->dump_ascii ) ) {
                                        $log->error( "MFN $mfn validation error:\n",
                                                $validate->report_error( $errors )
                                        );
                                }
                                next;   # validation doesn't create any output
                        }

                        if ($rules) {

                                my $ds = WebPAC::Normalize::data_structure(
                                        row => $row,
                                        rules => $rules,
                                        lookup => $lookup_hash,
                                        config => create_ds_config( $db_config, $database, $input, $mfn ),
                                        marc_encoding => 'utf-8',
                                        load_row_coderef => sub {
                                                my ($database,$input,$mfn) = @_;
#warn "### load_row($database,$input,$mfn) from data_structure\n";
                                                return $store->load_row(
                                                        database => $database,
                                                        input => $input,
                                                        id => $mfn,
                                                );
                                        },
                                );

                                $log->debug("ds = ", sub { dump($ds) });

                                if ( $ds ) {

                                        $store->save_ds(
                                                database => $database,
                                                input => $input_name,
                                                id => $mfn,
                                                ds => $ds,
                                        ) if !$stats;

                                        $indexer->add(
                                                id => "${input_name}/${mfn}",
                                                ds => $ds,
                                                type => $config->get($indexer_config)->{type},
                                        ) if $indexer;

                                        foreach my $out ( @output_modules ) {
                                                $out->add( $mfn, $ds ) if $out->can('add');
                                        }

                                } else {
                                        $log->warn("record $pos didn't produce any output after normalization rules!") unless $marc;
                                }
                        }

                        if ($marc) {
                                my $i = 0;

                                while (my $fields = WebPAC::Normalize::MARC::_get_marc_fields( fetch_next => 1 ) ) {
                                        $marc->add(
                                                id => $mfn . ( $i ? "/$i" : '' ),
                                                fields => $fields,
                                                leader => WebPAC::Normalize::MARC::_get_marc_leader(),
                                                row => $row,
                                        );
                                        $i++;
                                }

                                $log->info("Created $i instances of MFN $mfn\n") if ($i > 1);
                        }

                }

                if ($validate) {
                        my $errors = $validate->report;
                        if ($errors) {
                                $log->info("validation errors:\n$errors\n" );
                                print $report_fh "$errors\n" if ($report_fh);
                        }

                        print $report_fh "\nAll possible subfields/delimiter templates:\n", $validate->delimiters_templates( report => 1, current_input => 1 ), "\n\n";

                        # must be last thing that touches $validate for this input
                        $validate->reset;
                }

                if ($stats) {
                        my $s = $input_db->stats;
                        $log->info("statistics of fields usage:\n$s");
                        print $report_fh "Statistics of fields usage:\n$s" if ($report_fh);
                }

                # close MARC file
                $marc->finish if ($marc);

                # close report
                close($report_fh) if ($report_fh);
        }

        $indexer->finish if $indexer && $indexer->can('finish');

        foreach my $out ( @output_modules ) {
                $out->finish if $out->can('finish');
        }

        my $dt = time() - $start_t;
        $log->info("$total_rows records ", $indexer ? "indexed " : "",
                sprintf("in %.2f sec [%.2f rec/sec]",
                        $dt, ($total_rows / $dt)
                )
        );


        # end forked process
        if ($parallel) {
                $log->info("parallel process $$ finished");
                exit(0);
        }

}

if ($parallel) {
        # wait all children to finish
        sleep(1) while wait != -1;
        $log->info("all parallel processes finished");
}

# save new delimiters if needed
$validate->save_delimiters_templates if ( $validate_delimiters_path );

#
# handle links or merge after indexing
#

if ($merge) {
        print $estcmd_fh 'sudo /etc/init.d/hyperestraier start',$/;
        close($estcmd_fh);
        chmod 0700, $estcmd_path || $log->warn("can't chmod 0700 $estcmd_path: $!");
        system $estcmd_path;
} else {
        foreach my $link (@links) {
                $log->logdie("coderef in link ", Dumper($link), " is ", ref($link), " and not CODE") unless (ref($link) eq 'CODE');
                $link->();
        }
}