/[webpac2]/trunk/lib/WebPAC/Input.pm
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Contents of /trunk/lib/WebPAC/Input.pm

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Revision 634 - (show annotations)
Wed Sep 6 18:08:30 2006 UTC (17 years, 7 months ago) by dpavlin
File size: 15059 byte(s)
move logging to debug level

1 package WebPAC::Input;
2
3 use warnings;
4 use strict;
5
6 use blib;
7
8 use WebPAC::Common;
9 use base qw/WebPAC::Common/;
10 use Data::Dumper;
11 use Encode qw/from_to/;
12
13 =head1 NAME
14
15 WebPAC::Input - read different file formats into WebPAC
16
17 =head1 VERSION
18
19 Version 0.11
20
21 =cut
22
23 our $VERSION = '0.11';
24
25 =head1 SYNOPSIS
26
27 This module implements input as database which have fixed and known
28 I<size> while indexing and single unique numeric identifier for database
29 position ranging from 1 to I<size>.
30
31 Simply, something that is indexed by unmber from 1 .. I<size>.
32
33 Examples of such databases are CDS/ISIS files, MARC files, lines in
34 text file, and so on.
35
36 Specific file formats are implemented using low-level interface modules,
37 located in C<WebPAC::Input::*> namespace which export C<open_db>,
38 C<fetch_rec> and optional C<init> functions.
39
40 Perhaps a little code snippet.
41
42 use WebPAC::Input;
43
44 my $db = WebPAC::Input->new(
45 module => 'WebPAC::Input::ISIS',
46 low_mem => 1,
47 );
48
49 $db->open( path => '/path/to/database' );
50 print "database size: ",$db->size,"\n";
51 while (my $rec = $db->fetch) {
52 # do something with $rec
53 }
54
55
56
57 =head1 FUNCTIONS
58
59 =head2 new
60
61 Create new input database object.
62
63 my $db = new WebPAC::Input(
64 module => 'WebPAC::Input::MARC',
65 encoding => 'ISO-8859-2',
66 low_mem => 1,
67 recode => 'char pairs',
68 no_progress_bar => 1,
69 );
70
71 C<module> is low-level file format module. See L<WebPAC::Input::ISIS> and
72 L<WebPAC::Input::MARC>.
73
74 Optional parametar C<encoding> specify application code page (which will be
75 used internally). This should probably be your terminal encoding, and by
76 default, it C<ISO-8859-2>.
77
78 Default is not to use C<low_mem> options (see L<MEMORY USAGE> below).
79
80 C<recode> is optional string constisting of character or words pairs that
81 should be replaced in input stream.
82
83 C<no_progress_bar> disables progress bar output on C<STDOUT>
84
85 This function will also call low-level C<init> if it exists with same
86 parametars.
87
88 =cut
89
90 sub new {
91 my $class = shift;
92 my $self = {@_};
93 bless($self, $class);
94
95 my $log = $self->_get_logger;
96
97 $log->logconfess("code_page argument is not suppored any more. change it to encoding") if ($self->{lookup});
98 $log->logconfess("lookup argument is not suppored any more. rewrite call to lookup_ref") if ($self->{lookup});
99
100 $log->logconfess("specify low-level file format module") unless ($self->{module});
101 my $module = $self->{module};
102 $module =~ s#::#/#g;
103 $module .= '.pm';
104 $log->debug("require low-level module $self->{module} from $module");
105
106 require $module;
107 #eval $self->{module} .'->import';
108
109 # check if required subclasses are implemented
110 foreach my $subclass (qw/open_db fetch_rec init/) {
111 my $n = $self->{module} . '::' . $subclass;
112 if (! defined &{ $n }) {
113 my $missing = "missing $subclass in $self->{module}";
114 $self->{$subclass} = sub { $log->logwarn($missing) };
115 } else {
116 $self->{$subclass} = \&{ $n };
117 }
118 }
119
120 if ($self->{init}) {
121 $log->debug("calling init");
122 $self->{init}->($self, @_);
123 }
124
125 $self->{'encoding'} ||= 'ISO-8859-2';
126
127 # running with low_mem flag? well, use DBM::Deep then.
128 if ($self->{'low_mem'}) {
129 $log->info("running with low_mem which impacts performance (<32 Mb memory usage)");
130
131 my $db_file = "data.db";
132
133 if (-e $db_file) {
134 unlink $db_file or $log->logdie("can't remove '$db_file' from last run");
135 $log->debug("removed '$db_file' from last run");
136 }
137
138 require DBM::Deep;
139
140 my $db = new DBM::Deep $db_file;
141
142 $log->logdie("DBM::Deep error: $!") unless ($db);
143
144 if ($db->error()) {
145 $log->logdie("can't open '$db_file' under low_mem: ",$db->error());
146 } else {
147 $log->debug("using file '$db_file' for DBM::Deep");
148 }
149
150 $self->{'db'} = $db;
151 }
152
153 $self ? return $self : return undef;
154 }
155
156 =head2 open
157
158 This function will read whole database in memory and produce lookups.
159
160 $input->open(
161 path => '/path/to/database/file',
162 code_page => 'cp852',
163 limit => 500,
164 offset => 6000,
165 lookup => $lookup_obj,
166 stats => 1,
167 lookup_ref => sub {
168 my ($k,$v) = @_;
169 # store lookup $k => $v
170 },
171 modify_records => {
172 900 => { '^a' => { ' : ' => '^b' } },
173 901 => { '*' => { '^b' => ' ; ' } },
174 },
175 );
176
177 By default, C<code_page> is assumed to be C<cp852>.
178
179 C<offset> is optional parametar to position at some offset before reading from database.
180
181 C<limit> is optional parametar to read just C<limit> records from database
182
183 C<stats> create optional report about usage of fields and subfields
184
185 C<lookup_coderef> is closure to call when adding C<< key => 'value' >> combinations to
186 lookup.
187
188 C<modify_records> specify mapping from subfields to delimiters or from
189 delimiters to subfields, as well as oprations on fields (if subfield is
190 defined as C<*>.
191
192 Returns size of database, regardless of C<offset> and C<limit>
193 parametars, see also C<size>.
194
195 =cut
196
197 sub open {
198 my $self = shift;
199 my $arg = {@_};
200
201 my $log = $self->_get_logger();
202
203 $log->logconfess("lookup argument is not suppored any more. rewrite call to lookup_coderef") if ($arg->{lookup});
204 $log->logconfess("lookup_coderef must be CODE, not ",ref($arg->{lookup_coderef}))
205 if ($arg->{lookup_coderef} && ref($arg->{lookup_coderef}) ne 'CODE');
206
207 $log->logcroak("need path") if (! $arg->{'path'});
208 my $code_page = $arg->{'code_page'} || 'cp852';
209
210 # store data in object
211 $self->{'input_code_page'} = $code_page;
212 foreach my $v (qw/path offset limit/) {
213 $self->{$v} = $arg->{$v} if ($arg->{$v});
214 }
215
216 my $filter_ref;
217 my $recode_regex;
218 my $recode_map;
219
220 if ($self->{recode}) {
221 my @r = split(/\s/, $self->{recode});
222 if ($#r % 2 != 1) {
223 $log->logwarn("recode needs even number of elements (some number of valid pairs)");
224 } else {
225 while (@r) {
226 my $from = shift @r;
227 my $to = shift @r;
228 $recode_map->{$from} = $to;
229 }
230
231 $recode_regex = join '|' => keys %{ $recode_map };
232
233 $log->debug("using recode regex: $recode_regex");
234 }
235
236 }
237
238 my $rec_regex = $self->modify_record_regexps(%{ $arg->{modify_records} });
239 $log->debug("rec_regex: ", Dumper($rec_regex));
240
241 my ($db, $size) = $self->{open_db}->( $self,
242 path => $arg->{path},
243 # filter => sub {
244 # my ($l,$f_nr) = @_;
245 # return unless defined($l);
246 # from_to($l, $code_page, $self->{'encoding'});
247 # $l =~ s/($recode_regex)/$recode_map->{$1}/g if ($recode_regex && $recode_map);
248 # return $l;
249 # },
250 %{ $arg },
251 );
252
253 unless (defined($db)) {
254 $log->logwarn("can't open database $arg->{path}, skipping...");
255 return;
256 }
257
258 unless ($size) {
259 $log->logwarn("no records in database $arg->{path}, skipping...");
260 return;
261 }
262
263 my $from_rec = 1;
264 my $to_rec = $size;
265
266 if (my $s = $self->{offset}) {
267 $log->debug("skipping to MFN $s");
268 $from_rec = $s;
269 } else {
270 $self->{offset} = $from_rec;
271 }
272
273 if ($self->{limit}) {
274 $log->debug("limiting to ",$self->{limit}," records");
275 $to_rec = $from_rec + $self->{limit} - 1;
276 $to_rec = $size if ($to_rec > $size);
277 }
278
279 # store size for later
280 $self->{size} = ($to_rec - $from_rec) ? ($to_rec - $from_rec + 1) : 0;
281
282 $log->info("processing $self->{size}/$size records [$from_rec-$to_rec] convert $code_page -> $self->{encoding}", $self->{stats} ? ' [stats]' : '');
283
284 # read database
285 for (my $pos = $from_rec; $pos <= $to_rec; $pos++) {
286
287 $log->debug("position: $pos\n");
288
289 my $rec = $self->{fetch_rec}->($self, $db, $pos, sub {
290 my ($l,$f_nr) = @_;
291 # return unless defined($l);
292 # return $l unless ($rec_regex && $f_nr);
293
294 $log->debug("-=> $f_nr ## $l");
295
296 # codepage conversion and recode_regex
297 from_to($l, $code_page, $self->{'encoding'});
298 $l =~ s/($recode_regex)/$recode_map->{$1}/g if ($recode_regex && $recode_map);
299
300 # apply regexps
301 if ($rec_regex && defined($rec_regex->{$f_nr})) {
302 $log->logconfess("regexps->{$f_nr} must be ARRAY") if (ref($rec_regex->{$f_nr}) ne 'ARRAY');
303 my $c = 0;
304 foreach my $r (@{ $rec_regex->{$f_nr} }) {
305 my $old_l = $l;
306 eval '$l =~ ' . $r;
307 if ($old_l ne $l) {
308 $log->debug("REGEX on $f_nr eval \$l =~ $r\n## old l: [$old_l]\n## new l: [$l]");
309 }
310 $log->error("error applying regex: $r") if ($@);
311 }
312 }
313
314 $log->debug("<=- $f_nr ## $l");
315 return $l;
316 });
317
318 $log->debug(sub { Dumper($rec) });
319
320 if (! $rec) {
321 $log->warn("record $pos empty? skipping...");
322 next;
323 }
324
325 # store
326 if ($self->{low_mem}) {
327 $self->{db}->put($pos, $rec);
328 } else {
329 $self->{data}->{$pos} = $rec;
330 }
331
332 # create lookup
333 $arg->{'lookup_coderef'}->( $rec ) if ($rec && $arg->{'lookup_coderef'});
334
335 # update counters for statistics
336 if ($self->{stats}) {
337
338 # fetch clean record with regexpes applied for statistics
339 my $rec = $self->{fetch_rec}->($self, $db, $pos);
340
341 foreach my $fld (keys %{ $rec }) {
342 $self->{_stats}->{fld}->{ $fld }++;
343
344 $log->logdie("invalid record fild $fld, not ARRAY")
345 unless (ref($rec->{ $fld }) eq 'ARRAY');
346
347 foreach my $row (@{ $rec->{$fld} }) {
348
349 if (ref($row) eq 'HASH') {
350
351 foreach my $sf (keys %{ $row }) {
352 next if ($sf eq 'subfields');
353 $self->{_stats}->{sf}->{ $fld }->{ $sf }->{count}++;
354 $self->{_stats}->{sf}->{ $fld }->{ $sf }->{repeatable}++
355 if (ref($row->{$sf}) eq 'ARRAY');
356 }
357
358 } else {
359 $self->{_stats}->{repeatable}->{ $fld }++;
360 }
361 }
362 }
363 }
364
365 $self->progress_bar($pos,$to_rec) unless ($self->{no_progress_bar});
366
367 }
368
369 $self->{pos} = -1;
370 $self->{last_pcnt} = 0;
371
372 # store max mfn and return it.
373 $self->{max_pos} = $to_rec;
374 $log->debug("max_pos: $to_rec");
375
376 return $size;
377 }
378
379 =head2 fetch
380
381 Fetch next record from database. It will also displays progress bar.
382
383 my $rec = $isis->fetch;
384
385 Record from this function should probably go to C<data_structure> for
386 normalisation.
387
388 =cut
389
390 sub fetch {
391 my $self = shift;
392
393 my $log = $self->_get_logger();
394
395 $log->logconfess("it seems that you didn't load database!") unless ($self->{pos});
396
397 if ($self->{pos} == -1) {
398 $self->{pos} = $self->{offset};
399 } else {
400 $self->{pos}++;
401 }
402
403 my $mfn = $self->{pos};
404
405 if ($mfn > $self->{max_pos}) {
406 $self->{pos} = $self->{max_pos};
407 $log->debug("at EOF");
408 return;
409 }
410
411 $self->progress_bar($mfn,$self->{max_pos}) unless ($self->{no_progress_bar});
412
413 my $rec;
414
415 if ($self->{low_mem}) {
416 $rec = $self->{db}->get($mfn);
417 } else {
418 $rec = $self->{data}->{$mfn};
419 }
420
421 $rec ||= 0E0;
422 }
423
424 =head2 pos
425
426 Returns current record number (MFN).
427
428 print $isis->pos;
429
430 First record in database has position 1.
431
432 =cut
433
434 sub pos {
435 my $self = shift;
436 return $self->{pos};
437 }
438
439
440 =head2 size
441
442 Returns number of records in database
443
444 print $isis->size;
445
446 Result from this function can be used to loop through all records
447
448 foreach my $mfn ( 1 ... $isis->size ) { ... }
449
450 because it takes into account C<offset> and C<limit>.
451
452 =cut
453
454 sub size {
455 my $self = shift;
456 return $self->{size};
457 }
458
459 =head2 seek
460
461 Seek to specified MFN in file.
462
463 $isis->seek(42);
464
465 First record in database has position 1.
466
467 =cut
468
469 sub seek {
470 my $self = shift;
471 my $pos = shift || return;
472
473 my $log = $self->_get_logger();
474
475 if ($pos < 1) {
476 $log->warn("seek before first record");
477 $pos = 1;
478 } elsif ($pos > $self->{max_pos}) {
479 $log->warn("seek beyond last record");
480 $pos = $self->{max_pos};
481 }
482
483 return $self->{pos} = (($pos - 1) || -1);
484 }
485
486 =head2 stats
487
488 Dump statistics about field and subfield usage
489
490 print $input->stats;
491
492 =cut
493
494 sub stats {
495 my $self = shift;
496
497 my $log = $self->_get_logger();
498
499 my $s = $self->{_stats};
500 if (! $s) {
501 $log->warn("called stats, but there is no statistics collected");
502 return;
503 }
504
505 my $max_fld = 0;
506
507 my $out = join("\n",
508 map {
509 my $f = $_ || die "no field";
510 my $v = $s->{fld}->{$f} || die "no s->{fld}->{$f}";
511 $max_fld = $v if ($v > $max_fld);
512
513 my $o = sprintf("%4s %d ~", $f, $v);
514
515 if (defined($s->{sf}->{$f})) {
516 map {
517 $o .= sprintf(" %s:%d%s", $_,
518 $s->{sf}->{$f}->{$_}->{count},
519 $s->{sf}->{$f}->{$_}->{repeatable} ? '*' : '',
520 );
521 } sort keys %{ $s->{sf}->{$f} };
522 }
523
524 if (my $v_r = $s->{repeatable}->{$f}) {
525 $o .= " ($v_r)" if ($v_r != $v);
526 }
527
528 $o;
529 } sort { $a cmp $b } keys %{ $s->{fld} }
530 );
531
532 $log->debug( sub { Dumper($s) } );
533
534 return $out;
535 }
536
537 =head2 modify_record_regexps
538
539 Generate hash with regexpes to be applied using L<filter>.
540
541 my $regexpes = $input->modify_record_regexps(
542 900 => { '^a' => { ' : ' => '^b' } },
543 901 => { '*' => { '^b' => ' ; ' } },
544 );
545
546 =cut
547
548 sub modify_record_regexps {
549 my $self = shift;
550 my $modify_record = {@_};
551
552 my $regexpes;
553
554 my $log = $self->_get_logger();
555
556 foreach my $f (keys %$modify_record) {
557 $log->debug("field: $f");
558
559 foreach my $sf (keys %{ $modify_record->{$f} }) {
560 $log->debug("subfield: $sf");
561
562 foreach my $from (keys %{ $modify_record->{$f}->{$sf} }) {
563 my $to = $modify_record->{$f}->{$sf}->{$from};
564 #die "no field?" unless defined($to);
565 $log->debug("transform: |$from| -> |$to|");
566
567 if ($sf =~ /^\^/) {
568 my $regex =
569 's/\Q'. $sf .'\E(.*?)\Q'. $from .'\E(.*?)/'. $sf .'$1'. $to .'$2/g';
570 push @{ $regexpes->{$f} }, $regex;
571 $log->debug(">>>>> $regex [sf]");
572 } else {
573 my $regex =
574 's/\Q'. $from .'\E/'. $to .'/g';
575 push @{ $regexpes->{$f} }, $regex;
576 $log->debug(">>>>> $regex [global]");
577 }
578
579 }
580 }
581 }
582
583 return $regexpes;
584 }
585
586 =head1 MEMORY USAGE
587
588 C<low_mem> options is double-edged sword. If enabled, WebPAC
589 will run on memory constraint machines (which doesn't have enough
590 physical RAM to create memory structure for whole source database).
591
592 If your machine has 512Mb or more of RAM and database is around 10000 records,
593 memory shouldn't be an issue. If you don't have enough physical RAM, you
594 might consider using virtual memory (if your operating system is handling it
595 well, like on FreeBSD or Linux) instead of dropping to L<DBM::Deep> to handle
596 parsed structure of ISIS database (this is what C<low_mem> option does).
597
598 Hitting swap at end of reading source database is probably o.k. However,
599 hitting swap before 90% will dramatically decrease performance and you will
600 be better off with C<low_mem> and using rest of availble memory for
601 operating system disk cache (Linux is particuallary good about this).
602 However, every access to database record will require disk access, so
603 generation phase will be slower 10-100 times.
604
605 Parsed structures are essential - you just have option to trade RAM memory
606 (which is fast) for disk space (which is slow). Be sure to have planty of
607 disk space if you are using C<low_mem> and thus L<DBM::Deep>.
608
609 However, when WebPAC is running on desktop machines (or laptops :-), it's
610 highly undesireable for system to start swapping. Using C<low_mem> option can
611 reduce WecPAC memory usage to around 64Mb for same database with lookup
612 fields and sorted indexes which stay in RAM. Performance will suffer, but
613 memory usage will really be minimal. It might be also more confortable to
614 run WebPAC reniced on those machines.
615
616
617 =head1 AUTHOR
618
619 Dobrica Pavlinusic, C<< <dpavlin@rot13.org> >>
620
621 =head1 COPYRIGHT & LICENSE
622
623 Copyright 2005-2006 Dobrica Pavlinusic, All Rights Reserved.
624
625 This program is free software; you can redistribute it and/or modify it
626 under the same terms as Perl itself.
627
628 =cut
629
630 1; # End of WebPAC::Input

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