/[webpac2]/trunk/lib/WebPAC/Input.pm
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Revision 626 - (hide annotations)
Mon Sep 4 16:15:07 2006 UTC (17 years, 7 months ago) by dpavlin
File size: 14985 byte(s)
fix MARC encoding whoes

1 dpavlin 1 package WebPAC::Input;
2    
3     use warnings;
4     use strict;
5    
6 dpavlin 507 use blib;
7    
8 dpavlin 487 use WebPAC::Common;
9 dpavlin 285 use base qw/WebPAC::Common/;
10 dpavlin 308 use Data::Dumper;
11 dpavlin 624 use Encode qw/from_to/;
12 dpavlin 285
13 dpavlin 1 =head1 NAME
14    
15 dpavlin 286 WebPAC::Input - read different file formats into WebPAC
16 dpavlin 1
17     =head1 VERSION
18    
19 dpavlin 619 Version 0.11
20 dpavlin 1
21     =cut
22    
23 dpavlin 619 our $VERSION = '0.11';
24 dpavlin 1
25     =head1 SYNOPSIS
26    
27 dpavlin 286 This module implements input as database which have fixed and known
28     I<size> while indexing and single unique numeric identifier for database
29     position ranging from 1 to I<size>.
30 dpavlin 1
31 dpavlin 286 Simply, something that is indexed by unmber from 1 .. I<size>.
32    
33     Examples of such databases are CDS/ISIS files, MARC files, lines in
34     text file, and so on.
35    
36     Specific file formats are implemented using low-level interface modules,
37     located in C<WebPAC::Input::*> namespace which export C<open_db>,
38     C<fetch_rec> and optional C<init> functions.
39    
40 dpavlin 1 Perhaps a little code snippet.
41    
42 dpavlin 597 use WebPAC::Input;
43 dpavlin 1
44 dpavlin 597 my $db = WebPAC::Input->new(
45     module => 'WebPAC::Input::ISIS',
46 dpavlin 286 low_mem => 1,
47 dpavlin 597 );
48 dpavlin 1
49 dpavlin 597 $db->open( path => '/path/to/database' );
50 dpavlin 416 print "database size: ",$db->size,"\n";
51     while (my $rec = $db->fetch) {
52     # do something with $rec
53     }
54 dpavlin 1
55 dpavlin 286
56    
57 dpavlin 1 =head1 FUNCTIONS
58    
59 dpavlin 3 =head2 new
60 dpavlin 1
61 dpavlin 3 Create new input database object.
62    
63 dpavlin 9 my $db = new WebPAC::Input(
64 dpavlin 286 module => 'WebPAC::Input::MARC',
65 dpavlin 585 encoding => 'ISO-8859-2',
66 dpavlin 10 low_mem => 1,
67 dpavlin 416 recode => 'char pairs',
68 dpavlin 483 no_progress_bar => 1,
69 dpavlin 9 );
70 dpavlin 3
71 dpavlin 597 C<module> is low-level file format module. See L<WebPAC::Input::ISIS> and
72 dpavlin 286 L<WebPAC::Input::MARC>.
73    
74 dpavlin 585 Optional parametar C<encoding> specify application code page (which will be
75 dpavlin 9 used internally). This should probably be your terminal encoding, and by
76     default, it C<ISO-8859-2>.
77    
78 dpavlin 10 Default is not to use C<low_mem> options (see L<MEMORY USAGE> below).
79    
80 dpavlin 483 C<recode> is optional string constisting of character or words pairs that
81     should be replaced in input stream.
82    
83     C<no_progress_bar> disables progress bar output on C<STDOUT>
84    
85 dpavlin 285 This function will also call low-level C<init> if it exists with same
86     parametars.
87    
88 dpavlin 1 =cut
89    
90 dpavlin 3 sub new {
91 dpavlin 285 my $class = shift;
92     my $self = {@_};
93 dpavlin 3 bless($self, $class);
94    
95 dpavlin 285 my $log = $self->_get_logger;
96    
97 dpavlin 585 $log->logconfess("code_page argument is not suppored any more. change it to encoding") if ($self->{lookup});
98     $log->logconfess("lookup argument is not suppored any more. rewrite call to lookup_ref") if ($self->{lookup});
99    
100 dpavlin 286 $log->logconfess("specify low-level file format module") unless ($self->{module});
101     my $module = $self->{module};
102     $module =~ s#::#/#g;
103     $module .= '.pm';
104     $log->debug("require low-level module $self->{module} from $module");
105 dpavlin 289
106 dpavlin 286 require $module;
107 dpavlin 289 #eval $self->{module} .'->import';
108 dpavlin 286
109 dpavlin 285 # check if required subclasses are implemented
110 dpavlin 289 foreach my $subclass (qw/open_db fetch_rec init/) {
111     my $n = $self->{module} . '::' . $subclass;
112     if (! defined &{ $n }) {
113 dpavlin 290 my $missing = "missing $subclass in $self->{module}";
114 dpavlin 301 $self->{$subclass} = sub { $log->logwarn($missing) };
115 dpavlin 286 } else {
116 dpavlin 289 $self->{$subclass} = \&{ $n };
117 dpavlin 286 }
118 dpavlin 285 }
119    
120 dpavlin 289 if ($self->{init}) {
121 dpavlin 285 $log->debug("calling init");
122 dpavlin 289 $self->{init}->($self, @_);
123 dpavlin 285 }
124    
125 dpavlin 585 $self->{'encoding'} ||= 'ISO-8859-2';
126 dpavlin 9
127 dpavlin 10 # running with low_mem flag? well, use DBM::Deep then.
128     if ($self->{'low_mem'}) {
129     $log->info("running with low_mem which impacts performance (<32 Mb memory usage)");
130    
131     my $db_file = "data.db";
132    
133     if (-e $db_file) {
134     unlink $db_file or $log->logdie("can't remove '$db_file' from last run");
135     $log->debug("removed '$db_file' from last run");
136     }
137    
138     require DBM::Deep;
139    
140     my $db = new DBM::Deep $db_file;
141    
142     $log->logdie("DBM::Deep error: $!") unless ($db);
143    
144     if ($db->error()) {
145     $log->logdie("can't open '$db_file' under low_mem: ",$db->error());
146     } else {
147     $log->debug("using file '$db_file' for DBM::Deep");
148     }
149    
150     $self->{'db'} = $db;
151     }
152    
153 dpavlin 3 $self ? return $self : return undef;
154 dpavlin 1 }
155    
156 dpavlin 285 =head2 open
157    
158     This function will read whole database in memory and produce lookups.
159    
160 dpavlin 286 $input->open(
161 dpavlin 285 path => '/path/to/database/file',
162 dpavlin 624 code_page => 'cp852',
163 dpavlin 286 limit => 500,
164     offset => 6000,
165 dpavlin 285 lookup => $lookup_obj,
166 dpavlin 506 stats => 1,
167 dpavlin 585 lookup_ref => sub {
168     my ($k,$v) = @_;
169     # store lookup $k => $v
170     },
171 dpavlin 597 modify_records => {
172     900 => { '^a' => { ' : ' => '^b' } },
173     901 => { '*' => { '^b' => ' ; ' } },
174     },
175 dpavlin 285 );
176    
177 dpavlin 624 By default, C<code_page> is assumed to be C<cp852>.
178 dpavlin 285
179 dpavlin 286 C<offset> is optional parametar to position at some offset before reading from database.
180 dpavlin 285
181 dpavlin 286 C<limit> is optional parametar to read just C<limit> records from database
182 dpavlin 285
183 dpavlin 506 C<stats> create optional report about usage of fields and subfields
184    
185 dpavlin 597 C<lookup_coderef> is closure to call when adding C<< key => 'value' >> combinations to
186 dpavlin 585 lookup.
187    
188 dpavlin 597 C<modify_records> specify mapping from subfields to delimiters or from
189     delimiters to subfields, as well as oprations on fields (if subfield is
190     defined as C<*>.
191    
192 dpavlin 286 Returns size of database, regardless of C<offset> and C<limit>
193     parametars, see also C<size>.
194 dpavlin 285
195     =cut
196    
197     sub open {
198     my $self = shift;
199     my $arg = {@_};
200    
201     my $log = $self->_get_logger();
202    
203 dpavlin 585 $log->logconfess("lookup argument is not suppored any more. rewrite call to lookup_coderef") if ($arg->{lookup});
204     $log->logconfess("lookup_coderef must be CODE, not ",ref($arg->{lookup_coderef}))
205     if ($arg->{lookup_coderef} && ref($arg->{lookup_coderef}) ne 'CODE');
206    
207 dpavlin 285 $log->logcroak("need path") if (! $arg->{'path'});
208 dpavlin 624 my $code_page = $arg->{'code_page'} || 'cp852';
209 dpavlin 285
210     # store data in object
211 dpavlin 292 $self->{'input_code_page'} = $code_page;
212 dpavlin 286 foreach my $v (qw/path offset limit/) {
213 dpavlin 285 $self->{$v} = $arg->{$v} if ($arg->{$v});
214     }
215    
216 dpavlin 416 my $filter_ref;
217 dpavlin 597 my $recode_regex;
218     my $recode_map;
219 dpavlin 416
220     if ($self->{recode}) {
221     my @r = split(/\s/, $self->{recode});
222     if ($#r % 2 != 1) {
223     $log->logwarn("recode needs even number of elements (some number of valid pairs)");
224     } else {
225     while (@r) {
226     my $from = shift @r;
227     my $to = shift @r;
228 dpavlin 597 $recode_map->{$from} = $to;
229 dpavlin 416 }
230    
231 dpavlin 597 $recode_regex = join '|' => keys %{ $recode_map };
232 dpavlin 416
233 dpavlin 597 $log->debug("using recode regex: $recode_regex");
234 dpavlin 416 }
235    
236     }
237    
238 dpavlin 597 my $rec_regex = $self->modify_record_regexps(%{ $arg->{modify_records} });
239     $log->debug("rec_regex: ", Dumper($rec_regex));
240    
241 dpavlin 289 my ($db, $size) = $self->{open_db}->( $self,
242 dpavlin 285 path => $arg->{path},
243 dpavlin 624 # filter => sub {
244     # my ($l,$f_nr) = @_;
245     # return unless defined($l);
246     # from_to($l, $code_page, $self->{'encoding'});
247     # $l =~ s/($recode_regex)/$recode_map->{$1}/g if ($recode_regex && $recode_map);
248     # return $l;
249     # },
250 dpavlin 523 %{ $arg },
251 dpavlin 285 );
252    
253 dpavlin 496 unless (defined($db)) {
254 dpavlin 285 $log->logwarn("can't open database $arg->{path}, skipping...");
255     return;
256     }
257    
258     unless ($size) {
259     $log->logwarn("no records in database $arg->{path}, skipping...");
260     return;
261     }
262    
263 dpavlin 339 my $from_rec = 1;
264     my $to_rec = $size;
265 dpavlin 285
266 dpavlin 286 if (my $s = $self->{offset}) {
267 dpavlin 513 $log->debug("skipping to MFN $s");
268 dpavlin 339 $from_rec = $s;
269 dpavlin 285 } else {
270 dpavlin 339 $self->{offset} = $from_rec;
271 dpavlin 285 }
272    
273 dpavlin 286 if ($self->{limit}) {
274 dpavlin 301 $log->debug("limiting to ",$self->{limit}," records");
275 dpavlin 339 $to_rec = $from_rec + $self->{limit} - 1;
276     $to_rec = $size if ($to_rec > $size);
277 dpavlin 285 }
278    
279     # store size for later
280 dpavlin 339 $self->{size} = ($to_rec - $from_rec) ? ($to_rec - $from_rec + 1) : 0;
281 dpavlin 285
282 dpavlin 585 $log->info("processing $self->{size}/$size records [$from_rec-$to_rec] convert $code_page -> $self->{encoding}", $self->{stats} ? ' [stats]' : '');
283 dpavlin 285
284     # read database
285 dpavlin 339 for (my $pos = $from_rec; $pos <= $to_rec; $pos++) {
286 dpavlin 285
287 dpavlin 286 $log->debug("position: $pos\n");
288 dpavlin 285
289 dpavlin 619 my $rec = $self->{fetch_rec}->($self, $db, $pos, sub {
290     my ($l,$f_nr) = @_;
291 dpavlin 624 # return unless defined($l);
292     # return $l unless ($rec_regex && $f_nr);
293 dpavlin 285
294 dpavlin 625 $log->debug("-=> $f_nr ## $l");
295    
296 dpavlin 624 # codepage conversion and recode_regex
297 dpavlin 626 from_to($l, $code_page, $self->{'encoding'});
298 dpavlin 624 $l =~ s/($recode_regex)/$recode_map->{$1}/g if ($recode_regex && $recode_map);
299    
300 dpavlin 619 # apply regexps
301     if ($rec_regex && defined($rec_regex->{$f_nr})) {
302     $log->logconfess("regexps->{$f_nr} must be ARRAY") if (ref($rec_regex->{$f_nr}) ne 'ARRAY');
303     my $c = 0;
304     foreach my $r (@{ $rec_regex->{$f_nr} }) {
305 dpavlin 626 my $old_l = $l;
306 dpavlin 619 eval '$l =~ ' . $r;
307 dpavlin 626 if ($old_l ne $l) {
308     $log->debug("REGEX on $f_nr eval \$l =~ $r\n## old l: [$old_l]\n## new l: [$l]");
309     }
310 dpavlin 619 $log->error("error applying regex: $r") if ($@);
311     }
312     }
313    
314 dpavlin 625 $log->debug("<=- $f_nr ## $l");
315 dpavlin 619 return $l;
316     });
317    
318 dpavlin 308 $log->debug(sub { Dumper($rec) });
319    
320 dpavlin 285 if (! $rec) {
321 dpavlin 286 $log->warn("record $pos empty? skipping...");
322 dpavlin 285 next;
323     }
324    
325     # store
326 dpavlin 286 if ($self->{low_mem}) {
327     $self->{db}->put($pos, $rec);
328 dpavlin 285 } else {
329 dpavlin 286 $self->{data}->{$pos} = $rec;
330 dpavlin 285 }
331    
332     # create lookup
333 dpavlin 585 $arg->{'lookup_coderef'}->( $rec ) if ($rec && $arg->{'lookup_coderef'});
334 dpavlin 285
335 dpavlin 506 # update counters for statistics
336     if ($self->{stats}) {
337 dpavlin 593
338 dpavlin 619 # fetch clean record with regexpes applied for statistics
339     my $rec = $self->{fetch_rec}->($self, $db, $pos);
340    
341 dpavlin 593 foreach my $fld (keys %{ $rec }) {
342 dpavlin 506 $self->{_stats}->{fld}->{ $fld }++;
343 dpavlin 593
344     $log->logdie("invalid record fild $fld, not ARRAY")
345     unless (ref($rec->{ $fld }) eq 'ARRAY');
346    
347     foreach my $row (@{ $rec->{$fld} }) {
348    
349     if (ref($row) eq 'HASH') {
350    
351     foreach my $sf (keys %{ $row }) {
352 dpavlin 619 next if ($sf eq 'subfields');
353 dpavlin 593 $self->{_stats}->{sf}->{ $fld }->{ $sf }->{count}++;
354     $self->{_stats}->{sf}->{ $fld }->{ $sf }->{repeatable}++
355     if (ref($row->{$sf}) eq 'ARRAY');
356 dpavlin 506 }
357 dpavlin 593
358     } else {
359     $self->{_stats}->{repeatable}->{ $fld }++;
360     }
361 dpavlin 506 }
362 dpavlin 593 }
363 dpavlin 506 }
364    
365 dpavlin 483 $self->progress_bar($pos,$to_rec) unless ($self->{no_progress_bar});
366 dpavlin 285
367     }
368    
369 dpavlin 286 $self->{pos} = -1;
370     $self->{last_pcnt} = 0;
371 dpavlin 285
372     # store max mfn and return it.
373 dpavlin 339 $self->{max_pos} = $to_rec;
374     $log->debug("max_pos: $to_rec");
375 dpavlin 285
376     return $size;
377     }
378    
379     =head2 fetch
380    
381     Fetch next record from database. It will also displays progress bar.
382    
383     my $rec = $isis->fetch;
384    
385     Record from this function should probably go to C<data_structure> for
386     normalisation.
387    
388     =cut
389    
390     sub fetch {
391     my $self = shift;
392    
393     my $log = $self->_get_logger();
394    
395 dpavlin 286 $log->logconfess("it seems that you didn't load database!") unless ($self->{pos});
396 dpavlin 285
397 dpavlin 286 if ($self->{pos} == -1) {
398     $self->{pos} = $self->{offset};
399 dpavlin 285 } else {
400 dpavlin 286 $self->{pos}++;
401 dpavlin 285 }
402    
403 dpavlin 286 my $mfn = $self->{pos};
404 dpavlin 285
405 dpavlin 286 if ($mfn > $self->{max_pos}) {
406     $self->{pos} = $self->{max_pos};
407 dpavlin 285 $log->debug("at EOF");
408     return;
409     }
410    
411 dpavlin 483 $self->progress_bar($mfn,$self->{max_pos}) unless ($self->{no_progress_bar});
412 dpavlin 285
413     my $rec;
414    
415 dpavlin 286 if ($self->{low_mem}) {
416     $rec = $self->{db}->get($mfn);
417 dpavlin 285 } else {
418 dpavlin 286 $rec = $self->{data}->{$mfn};
419 dpavlin 285 }
420    
421     $rec ||= 0E0;
422     }
423    
424     =head2 pos
425    
426     Returns current record number (MFN).
427    
428     print $isis->pos;
429    
430     First record in database has position 1.
431    
432     =cut
433    
434     sub pos {
435     my $self = shift;
436 dpavlin 286 return $self->{pos};
437 dpavlin 285 }
438    
439    
440     =head2 size
441    
442     Returns number of records in database
443    
444     print $isis->size;
445    
446     Result from this function can be used to loop through all records
447    
448     foreach my $mfn ( 1 ... $isis->size ) { ... }
449    
450 dpavlin 286 because it takes into account C<offset> and C<limit>.
451 dpavlin 285
452     =cut
453    
454     sub size {
455     my $self = shift;
456 dpavlin 286 return $self->{size};
457 dpavlin 285 }
458    
459     =head2 seek
460    
461     Seek to specified MFN in file.
462    
463     $isis->seek(42);
464    
465     First record in database has position 1.
466    
467     =cut
468    
469     sub seek {
470     my $self = shift;
471     my $pos = shift || return;
472    
473     my $log = $self->_get_logger();
474    
475     if ($pos < 1) {
476     $log->warn("seek before first record");
477     $pos = 1;
478 dpavlin 286 } elsif ($pos > $self->{max_pos}) {
479 dpavlin 285 $log->warn("seek beyond last record");
480 dpavlin 286 $pos = $self->{max_pos};
481 dpavlin 285 }
482    
483 dpavlin 286 return $self->{pos} = (($pos - 1) || -1);
484 dpavlin 285 }
485    
486 dpavlin 506 =head2 stats
487 dpavlin 285
488 dpavlin 506 Dump statistics about field and subfield usage
489    
490 dpavlin 507 print $input->stats;
491 dpavlin 506
492     =cut
493    
494     sub stats {
495     my $self = shift;
496 dpavlin 507
497     my $log = $self->_get_logger();
498    
499     my $s = $self->{_stats};
500     if (! $s) {
501     $log->warn("called stats, but there is no statistics collected");
502     return;
503     }
504    
505     my $max_fld = 0;
506    
507     my $out = join("\n",
508     map {
509     my $f = $_ || die "no field";
510     my $v = $s->{fld}->{$f} || die "no s->{fld}->{$f}";
511     $max_fld = $v if ($v > $max_fld);
512    
513 dpavlin 519 my $o = sprintf("%4s %d ~", $f, $v);
514 dpavlin 507
515     if (defined($s->{sf}->{$f})) {
516     map {
517 dpavlin 593 $o .= sprintf(" %s:%d%s", $_,
518     $s->{sf}->{$f}->{$_}->{count},
519     $s->{sf}->{$f}->{$_}->{repeatable} ? '*' : '',
520     );
521 dpavlin 507 } sort keys %{ $s->{sf}->{$f} };
522     }
523    
524     if (my $v_r = $s->{repeatable}->{$f}) {
525     $o .= " ($v_r)" if ($v_r != $v);
526     }
527    
528     $o;
529 dpavlin 519 } sort { $a cmp $b } keys %{ $s->{fld} }
530 dpavlin 507 );
531    
532     $log->debug( sub { Dumper($s) } );
533    
534     return $out;
535 dpavlin 506 }
536    
537 dpavlin 598 =head2 modify_record_regexps
538 dpavlin 597
539     Generate hash with regexpes to be applied using L<filter>.
540    
541     my $regexpes = $input->modify_record_regexps(
542     900 => { '^a' => { ' : ' => '^b' } },
543     901 => { '*' => { '^b' => ' ; ' } },
544     );
545    
546     =cut
547    
548     sub modify_record_regexps {
549     my $self = shift;
550     my $modify_record = {@_};
551    
552     my $regexpes;
553    
554     foreach my $f (keys %$modify_record) {
555     warn "--- f: $f\n";
556     foreach my $sf (keys %{ $modify_record->{$f} }) {
557     warn "---- sf: $sf\n";
558     foreach my $from (keys %{ $modify_record->{$f}->{$sf} }) {
559     my $to = $modify_record->{$f}->{$sf}->{$from};
560     #die "no field?" unless defined($to);
561     warn "----- transform: |$from| -> |$to|\n";
562    
563     if ($sf =~ /^\^/) {
564     my $regex =
565     's/\Q'. $sf .'\E([^\^]+)\Q'. $from .'\E([^\^]+)/'. $sf .'$1'. $to .'$2/g';
566     push @{ $regexpes->{$f} }, $regex;
567     warn ">>>>> $regex [sf]\n";
568     } else {
569     my $regex =
570     's/\Q'. $from .'\E/'. $to .'/g';
571     push @{ $regexpes->{$f} }, $regex;
572     warn ">>>>> $regex [global]\n";
573     }
574    
575     }
576     }
577     }
578    
579     return $regexpes;
580     }
581    
582 dpavlin 3 =head1 MEMORY USAGE
583 dpavlin 1
584 dpavlin 3 C<low_mem> options is double-edged sword. If enabled, WebPAC
585     will run on memory constraint machines (which doesn't have enough
586     physical RAM to create memory structure for whole source database).
587 dpavlin 1
588 dpavlin 3 If your machine has 512Mb or more of RAM and database is around 10000 records,
589     memory shouldn't be an issue. If you don't have enough physical RAM, you
590     might consider using virtual memory (if your operating system is handling it
591     well, like on FreeBSD or Linux) instead of dropping to L<DBM::Deep> to handle
592     parsed structure of ISIS database (this is what C<low_mem> option does).
593 dpavlin 1
594 dpavlin 3 Hitting swap at end of reading source database is probably o.k. However,
595     hitting swap before 90% will dramatically decrease performance and you will
596     be better off with C<low_mem> and using rest of availble memory for
597     operating system disk cache (Linux is particuallary good about this).
598     However, every access to database record will require disk access, so
599     generation phase will be slower 10-100 times.
600    
601     Parsed structures are essential - you just have option to trade RAM memory
602     (which is fast) for disk space (which is slow). Be sure to have planty of
603     disk space if you are using C<low_mem> and thus L<DBM::Deep>.
604    
605     However, when WebPAC is running on desktop machines (or laptops :-), it's
606     highly undesireable for system to start swapping. Using C<low_mem> option can
607     reduce WecPAC memory usage to around 64Mb for same database with lookup
608     fields and sorted indexes which stay in RAM. Performance will suffer, but
609     memory usage will really be minimal. It might be also more confortable to
610     run WebPAC reniced on those machines.
611    
612    
613     =head1 AUTHOR
614    
615     Dobrica Pavlinusic, C<< <dpavlin@rot13.org> >>
616    
617 dpavlin 1 =head1 COPYRIGHT & LICENSE
618    
619 dpavlin 599 Copyright 2005-2006 Dobrica Pavlinusic, All Rights Reserved.
620 dpavlin 1
621     This program is free software; you can redistribute it and/or modify it
622     under the same terms as Perl itself.
623    
624     =cut
625    
626     1; # End of WebPAC::Input

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