/[webpac2]/trunk/lib/WebPAC/Input.pm
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Annotation of /trunk/lib/WebPAC/Input.pm

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Revision 613 - (hide annotations)
Wed Aug 23 11:04:32 2006 UTC (17 years, 8 months ago) by dpavlin
File size: 14924 byte(s)
 r857@llin:  dpavlin | 2006-08-23 13:04:58 +0200
 modify_records is now applied only once for each field to prevent looping of regexpes

1 dpavlin 1 package WebPAC::Input;
2    
3     use warnings;
4     use strict;
5    
6 dpavlin 507 use blib;
7    
8 dpavlin 487 use WebPAC::Common;
9 dpavlin 285 use base qw/WebPAC::Common/;
10     use Text::Iconv;
11 dpavlin 308 use Data::Dumper;
12 dpavlin 285
13 dpavlin 1 =head1 NAME
14    
15 dpavlin 286 WebPAC::Input - read different file formats into WebPAC
16 dpavlin 1
17     =head1 VERSION
18    
19 dpavlin 613 Version 0.10
20 dpavlin 1
21     =cut
22    
23 dpavlin 613 our $VERSION = '0.10';
24 dpavlin 1
25     =head1 SYNOPSIS
26    
27 dpavlin 286 This module implements input as database which have fixed and known
28     I<size> while indexing and single unique numeric identifier for database
29     position ranging from 1 to I<size>.
30 dpavlin 1
31 dpavlin 286 Simply, something that is indexed by unmber from 1 .. I<size>.
32    
33     Examples of such databases are CDS/ISIS files, MARC files, lines in
34     text file, and so on.
35    
36     Specific file formats are implemented using low-level interface modules,
37     located in C<WebPAC::Input::*> namespace which export C<open_db>,
38     C<fetch_rec> and optional C<init> functions.
39    
40 dpavlin 1 Perhaps a little code snippet.
41    
42 dpavlin 597 use WebPAC::Input;
43 dpavlin 1
44 dpavlin 597 my $db = WebPAC::Input->new(
45     module => 'WebPAC::Input::ISIS',
46 dpavlin 286 low_mem => 1,
47 dpavlin 597 );
48 dpavlin 1
49 dpavlin 597 $db->open( path => '/path/to/database' );
50 dpavlin 416 print "database size: ",$db->size,"\n";
51     while (my $rec = $db->fetch) {
52     # do something with $rec
53     }
54 dpavlin 1
55 dpavlin 286
56    
57 dpavlin 1 =head1 FUNCTIONS
58    
59 dpavlin 3 =head2 new
60 dpavlin 1
61 dpavlin 3 Create new input database object.
62    
63 dpavlin 9 my $db = new WebPAC::Input(
64 dpavlin 286 module => 'WebPAC::Input::MARC',
65 dpavlin 585 encoding => 'ISO-8859-2',
66 dpavlin 10 low_mem => 1,
67 dpavlin 416 recode => 'char pairs',
68 dpavlin 483 no_progress_bar => 1,
69 dpavlin 9 );
70 dpavlin 3
71 dpavlin 597 C<module> is low-level file format module. See L<WebPAC::Input::ISIS> and
72 dpavlin 286 L<WebPAC::Input::MARC>.
73    
74 dpavlin 585 Optional parametar C<encoding> specify application code page (which will be
75 dpavlin 9 used internally). This should probably be your terminal encoding, and by
76     default, it C<ISO-8859-2>.
77    
78 dpavlin 10 Default is not to use C<low_mem> options (see L<MEMORY USAGE> below).
79    
80 dpavlin 483 C<recode> is optional string constisting of character or words pairs that
81     should be replaced in input stream.
82    
83     C<no_progress_bar> disables progress bar output on C<STDOUT>
84    
85 dpavlin 285 This function will also call low-level C<init> if it exists with same
86     parametars.
87    
88 dpavlin 1 =cut
89    
90 dpavlin 3 sub new {
91 dpavlin 285 my $class = shift;
92     my $self = {@_};
93 dpavlin 3 bless($self, $class);
94    
95 dpavlin 285 my $log = $self->_get_logger;
96    
97 dpavlin 585 $log->logconfess("code_page argument is not suppored any more. change it to encoding") if ($self->{lookup});
98     $log->logconfess("lookup argument is not suppored any more. rewrite call to lookup_ref") if ($self->{lookup});
99    
100 dpavlin 286 $log->logconfess("specify low-level file format module") unless ($self->{module});
101     my $module = $self->{module};
102     $module =~ s#::#/#g;
103     $module .= '.pm';
104     $log->debug("require low-level module $self->{module} from $module");
105 dpavlin 289
106 dpavlin 286 require $module;
107 dpavlin 289 #eval $self->{module} .'->import';
108 dpavlin 286
109 dpavlin 285 # check if required subclasses are implemented
110 dpavlin 289 foreach my $subclass (qw/open_db fetch_rec init/) {
111     my $n = $self->{module} . '::' . $subclass;
112     if (! defined &{ $n }) {
113 dpavlin 290 my $missing = "missing $subclass in $self->{module}";
114 dpavlin 301 $self->{$subclass} = sub { $log->logwarn($missing) };
115 dpavlin 286 } else {
116 dpavlin 289 $self->{$subclass} = \&{ $n };
117 dpavlin 286 }
118 dpavlin 285 }
119    
120 dpavlin 289 if ($self->{init}) {
121 dpavlin 285 $log->debug("calling init");
122 dpavlin 289 $self->{init}->($self, @_);
123 dpavlin 285 }
124    
125 dpavlin 585 $self->{'encoding'} ||= 'ISO-8859-2';
126 dpavlin 9
127 dpavlin 10 # running with low_mem flag? well, use DBM::Deep then.
128     if ($self->{'low_mem'}) {
129     $log->info("running with low_mem which impacts performance (<32 Mb memory usage)");
130    
131     my $db_file = "data.db";
132    
133     if (-e $db_file) {
134     unlink $db_file or $log->logdie("can't remove '$db_file' from last run");
135     $log->debug("removed '$db_file' from last run");
136     }
137    
138     require DBM::Deep;
139    
140     my $db = new DBM::Deep $db_file;
141    
142     $log->logdie("DBM::Deep error: $!") unless ($db);
143    
144     if ($db->error()) {
145     $log->logdie("can't open '$db_file' under low_mem: ",$db->error());
146     } else {
147     $log->debug("using file '$db_file' for DBM::Deep");
148     }
149    
150     $self->{'db'} = $db;
151     }
152    
153 dpavlin 3 $self ? return $self : return undef;
154 dpavlin 1 }
155    
156 dpavlin 285 =head2 open
157    
158     This function will read whole database in memory and produce lookups.
159    
160 dpavlin 286 $input->open(
161 dpavlin 285 path => '/path/to/database/file',
162     code_page => '852',
163 dpavlin 286 limit => 500,
164     offset => 6000,
165 dpavlin 285 lookup => $lookup_obj,
166 dpavlin 506 stats => 1,
167 dpavlin 585 lookup_ref => sub {
168     my ($k,$v) = @_;
169     # store lookup $k => $v
170     },
171 dpavlin 597 modify_records => {
172     900 => { '^a' => { ' : ' => '^b' } },
173     901 => { '*' => { '^b' => ' ; ' } },
174     },
175 dpavlin 285 );
176    
177     By default, C<code_page> is assumed to be C<852>.
178    
179 dpavlin 286 C<offset> is optional parametar to position at some offset before reading from database.
180 dpavlin 285
181 dpavlin 286 C<limit> is optional parametar to read just C<limit> records from database
182 dpavlin 285
183 dpavlin 506 C<stats> create optional report about usage of fields and subfields
184    
185 dpavlin 597 C<lookup_coderef> is closure to call when adding C<< key => 'value' >> combinations to
186 dpavlin 585 lookup.
187    
188 dpavlin 597 C<modify_records> specify mapping from subfields to delimiters or from
189     delimiters to subfields, as well as oprations on fields (if subfield is
190     defined as C<*>.
191    
192 dpavlin 286 Returns size of database, regardless of C<offset> and C<limit>
193     parametars, see also C<size>.
194 dpavlin 285
195     =cut
196    
197     sub open {
198     my $self = shift;
199     my $arg = {@_};
200    
201     my $log = $self->_get_logger();
202    
203 dpavlin 585 $log->logconfess("lookup argument is not suppored any more. rewrite call to lookup_coderef") if ($arg->{lookup});
204     $log->logconfess("lookup_coderef must be CODE, not ",ref($arg->{lookup_coderef}))
205     if ($arg->{lookup_coderef} && ref($arg->{lookup_coderef}) ne 'CODE');
206    
207 dpavlin 285 $log->logcroak("need path") if (! $arg->{'path'});
208     my $code_page = $arg->{'code_page'} || '852';
209    
210     # store data in object
211 dpavlin 292 $self->{'input_code_page'} = $code_page;
212 dpavlin 286 foreach my $v (qw/path offset limit/) {
213 dpavlin 285 $self->{$v} = $arg->{$v} if ($arg->{$v});
214     }
215    
216     # create Text::Iconv object
217 dpavlin 585 $self->{iconv} = Text::Iconv->new($code_page,$self->{'encoding'}); ## FIXME remove!
218 dpavlin 285
219 dpavlin 416 my $filter_ref;
220 dpavlin 597 my $recode_regex;
221     my $recode_map;
222 dpavlin 416
223     if ($self->{recode}) {
224     my @r = split(/\s/, $self->{recode});
225     if ($#r % 2 != 1) {
226     $log->logwarn("recode needs even number of elements (some number of valid pairs)");
227     } else {
228     while (@r) {
229     my $from = shift @r;
230     my $to = shift @r;
231 dpavlin 597 $recode_map->{$from} = $to;
232 dpavlin 416 }
233    
234 dpavlin 597 $recode_regex = join '|' => keys %{ $recode_map };
235 dpavlin 416
236 dpavlin 597 $log->debug("using recode regex: $recode_regex");
237 dpavlin 416 }
238    
239     }
240    
241 dpavlin 597 my $rec_regex = $self->modify_record_regexps(%{ $arg->{modify_records} });
242     $log->debug("rec_regex: ", Dumper($rec_regex));
243    
244 dpavlin 289 my ($db, $size) = $self->{open_db}->( $self,
245 dpavlin 285 path => $arg->{path},
246 dpavlin 597 filter => sub {
247     my ($l,$f_nr) = @_;
248     return unless defined($l);
249    
250     ## FIXME remove iconv!
251     $l = $self->{iconv}->convert($l) if ($self->{iconv});
252    
253     $l =~ s/($recode_regex)/$recode_map->{$1}/g if ($recode_regex && $recode_map);
254    
255 dpavlin 599 ## FIXME remove this warning when we are sure that none of API is calling
256     ## this wrongly
257 dpavlin 606 #warn "filter called without field number" unless ($f_nr);
258 dpavlin 597
259 dpavlin 599 return $l unless ($rec_regex && $f_nr);
260    
261 dpavlin 613 # my $max_regex = 100;
262    
263 dpavlin 597 # apply regexps
264     if ($rec_regex && defined($rec_regex->{$f_nr})) {
265     $log->logconfess("regexps->{$f_nr} must be ARRAY") if (ref($rec_regex->{$f_nr}) ne 'ARRAY');
266     my $c = 0;
267     foreach my $r (@{ $rec_regex->{$f_nr} }) {
268 dpavlin 613 #$log->debug("\$l = $l\neval \$l =~ $r");
269     eval '$l =~ ' . $r;
270     $log->error("error applying regex: $r") if ($@);
271    
272     # while ( $c < $max_regex && eval '$l =~ ' . $r ) { $c++ };
273     # $log->error("field $f_nr has more than $max_regex regex iterations\n\$l = $l\neval \$l =~ $r") if ($c == $max_regex);
274    
275 dpavlin 597 }
276     }
277    
278     return $l;
279     },
280 dpavlin 523 %{ $arg },
281 dpavlin 285 );
282    
283 dpavlin 496 unless (defined($db)) {
284 dpavlin 285 $log->logwarn("can't open database $arg->{path}, skipping...");
285     return;
286     }
287    
288     unless ($size) {
289     $log->logwarn("no records in database $arg->{path}, skipping...");
290     return;
291     }
292    
293 dpavlin 339 my $from_rec = 1;
294     my $to_rec = $size;
295 dpavlin 285
296 dpavlin 286 if (my $s = $self->{offset}) {
297 dpavlin 513 $log->debug("skipping to MFN $s");
298 dpavlin 339 $from_rec = $s;
299 dpavlin 285 } else {
300 dpavlin 339 $self->{offset} = $from_rec;
301 dpavlin 285 }
302    
303 dpavlin 286 if ($self->{limit}) {
304 dpavlin 301 $log->debug("limiting to ",$self->{limit}," records");
305 dpavlin 339 $to_rec = $from_rec + $self->{limit} - 1;
306     $to_rec = $size if ($to_rec > $size);
307 dpavlin 285 }
308    
309     # store size for later
310 dpavlin 339 $self->{size} = ($to_rec - $from_rec) ? ($to_rec - $from_rec + 1) : 0;
311 dpavlin 285
312 dpavlin 585 $log->info("processing $self->{size}/$size records [$from_rec-$to_rec] convert $code_page -> $self->{encoding}", $self->{stats} ? ' [stats]' : '');
313 dpavlin 285
314     # read database
315 dpavlin 339 for (my $pos = $from_rec; $pos <= $to_rec; $pos++) {
316 dpavlin 285
317 dpavlin 286 $log->debug("position: $pos\n");
318 dpavlin 285
319 dpavlin 289 my $rec = $self->{fetch_rec}->($self, $db, $pos );
320 dpavlin 285
321 dpavlin 308 $log->debug(sub { Dumper($rec) });
322    
323 dpavlin 285 if (! $rec) {
324 dpavlin 286 $log->warn("record $pos empty? skipping...");
325 dpavlin 285 next;
326     }
327    
328     # store
329 dpavlin 286 if ($self->{low_mem}) {
330     $self->{db}->put($pos, $rec);
331 dpavlin 285 } else {
332 dpavlin 286 $self->{data}->{$pos} = $rec;
333 dpavlin 285 }
334    
335     # create lookup
336 dpavlin 585 $arg->{'lookup_coderef'}->( $rec ) if ($rec && $arg->{'lookup_coderef'});
337 dpavlin 285
338 dpavlin 506 # update counters for statistics
339     if ($self->{stats}) {
340 dpavlin 593
341     foreach my $fld (keys %{ $rec }) {
342 dpavlin 506 $self->{_stats}->{fld}->{ $fld }++;
343 dpavlin 593
344     $log->logdie("invalid record fild $fld, not ARRAY")
345     unless (ref($rec->{ $fld }) eq 'ARRAY');
346    
347     foreach my $row (@{ $rec->{$fld} }) {
348    
349     if (ref($row) eq 'HASH') {
350    
351     foreach my $sf (keys %{ $row }) {
352     $self->{_stats}->{sf}->{ $fld }->{ $sf }->{count}++;
353     $self->{_stats}->{sf}->{ $fld }->{ $sf }->{repeatable}++
354     if (ref($row->{$sf}) eq 'ARRAY');
355 dpavlin 506 }
356 dpavlin 593
357     } else {
358     $self->{_stats}->{repeatable}->{ $fld }++;
359     }
360 dpavlin 506 }
361 dpavlin 593 }
362 dpavlin 506 }
363    
364 dpavlin 483 $self->progress_bar($pos,$to_rec) unless ($self->{no_progress_bar});
365 dpavlin 285
366     }
367    
368 dpavlin 286 $self->{pos} = -1;
369     $self->{last_pcnt} = 0;
370 dpavlin 285
371     # store max mfn and return it.
372 dpavlin 339 $self->{max_pos} = $to_rec;
373     $log->debug("max_pos: $to_rec");
374 dpavlin 285
375     return $size;
376     }
377    
378     =head2 fetch
379    
380     Fetch next record from database. It will also displays progress bar.
381    
382     my $rec = $isis->fetch;
383    
384     Record from this function should probably go to C<data_structure> for
385     normalisation.
386    
387     =cut
388    
389     sub fetch {
390     my $self = shift;
391    
392     my $log = $self->_get_logger();
393    
394 dpavlin 286 $log->logconfess("it seems that you didn't load database!") unless ($self->{pos});
395 dpavlin 285
396 dpavlin 286 if ($self->{pos} == -1) {
397     $self->{pos} = $self->{offset};
398 dpavlin 285 } else {
399 dpavlin 286 $self->{pos}++;
400 dpavlin 285 }
401    
402 dpavlin 286 my $mfn = $self->{pos};
403 dpavlin 285
404 dpavlin 286 if ($mfn > $self->{max_pos}) {
405     $self->{pos} = $self->{max_pos};
406 dpavlin 285 $log->debug("at EOF");
407     return;
408     }
409    
410 dpavlin 483 $self->progress_bar($mfn,$self->{max_pos}) unless ($self->{no_progress_bar});
411 dpavlin 285
412     my $rec;
413    
414 dpavlin 286 if ($self->{low_mem}) {
415     $rec = $self->{db}->get($mfn);
416 dpavlin 285 } else {
417 dpavlin 286 $rec = $self->{data}->{$mfn};
418 dpavlin 285 }
419    
420     $rec ||= 0E0;
421     }
422    
423     =head2 pos
424    
425     Returns current record number (MFN).
426    
427     print $isis->pos;
428    
429     First record in database has position 1.
430    
431     =cut
432    
433     sub pos {
434     my $self = shift;
435 dpavlin 286 return $self->{pos};
436 dpavlin 285 }
437    
438    
439     =head2 size
440    
441     Returns number of records in database
442    
443     print $isis->size;
444    
445     Result from this function can be used to loop through all records
446    
447     foreach my $mfn ( 1 ... $isis->size ) { ... }
448    
449 dpavlin 286 because it takes into account C<offset> and C<limit>.
450 dpavlin 285
451     =cut
452    
453     sub size {
454     my $self = shift;
455 dpavlin 286 return $self->{size};
456 dpavlin 285 }
457    
458     =head2 seek
459    
460     Seek to specified MFN in file.
461    
462     $isis->seek(42);
463    
464     First record in database has position 1.
465    
466     =cut
467    
468     sub seek {
469     my $self = shift;
470     my $pos = shift || return;
471    
472     my $log = $self->_get_logger();
473    
474     if ($pos < 1) {
475     $log->warn("seek before first record");
476     $pos = 1;
477 dpavlin 286 } elsif ($pos > $self->{max_pos}) {
478 dpavlin 285 $log->warn("seek beyond last record");
479 dpavlin 286 $pos = $self->{max_pos};
480 dpavlin 285 }
481    
482 dpavlin 286 return $self->{pos} = (($pos - 1) || -1);
483 dpavlin 285 }
484    
485 dpavlin 506 =head2 stats
486 dpavlin 285
487 dpavlin 506 Dump statistics about field and subfield usage
488    
489 dpavlin 507 print $input->stats;
490 dpavlin 506
491     =cut
492    
493     sub stats {
494     my $self = shift;
495 dpavlin 507
496     my $log = $self->_get_logger();
497    
498     my $s = $self->{_stats};
499     if (! $s) {
500     $log->warn("called stats, but there is no statistics collected");
501     return;
502     }
503    
504     my $max_fld = 0;
505    
506     my $out = join("\n",
507     map {
508     my $f = $_ || die "no field";
509     my $v = $s->{fld}->{$f} || die "no s->{fld}->{$f}";
510     $max_fld = $v if ($v > $max_fld);
511    
512 dpavlin 519 my $o = sprintf("%4s %d ~", $f, $v);
513 dpavlin 507
514     if (defined($s->{sf}->{$f})) {
515     map {
516 dpavlin 593 $o .= sprintf(" %s:%d%s", $_,
517     $s->{sf}->{$f}->{$_}->{count},
518     $s->{sf}->{$f}->{$_}->{repeatable} ? '*' : '',
519     );
520 dpavlin 507 } sort keys %{ $s->{sf}->{$f} };
521     }
522    
523     if (my $v_r = $s->{repeatable}->{$f}) {
524     $o .= " ($v_r)" if ($v_r != $v);
525     }
526    
527     $o;
528 dpavlin 519 } sort { $a cmp $b } keys %{ $s->{fld} }
529 dpavlin 507 );
530    
531     $log->debug( sub { Dumper($s) } );
532    
533     return $out;
534 dpavlin 506 }
535    
536 dpavlin 598 =head2 modify_record_regexps
537 dpavlin 597
538     Generate hash with regexpes to be applied using L<filter>.
539    
540     my $regexpes = $input->modify_record_regexps(
541     900 => { '^a' => { ' : ' => '^b' } },
542     901 => { '*' => { '^b' => ' ; ' } },
543     );
544    
545     =cut
546    
547     sub modify_record_regexps {
548     my $self = shift;
549     my $modify_record = {@_};
550    
551     my $regexpes;
552    
553     foreach my $f (keys %$modify_record) {
554     warn "--- f: $f\n";
555     foreach my $sf (keys %{ $modify_record->{$f} }) {
556     warn "---- sf: $sf\n";
557     foreach my $from (keys %{ $modify_record->{$f}->{$sf} }) {
558     my $to = $modify_record->{$f}->{$sf}->{$from};
559     #die "no field?" unless defined($to);
560     warn "----- transform: |$from| -> |$to|\n";
561    
562     if ($sf =~ /^\^/) {
563     my $regex =
564     's/\Q'. $sf .'\E([^\^]+)\Q'. $from .'\E([^\^]+)/'. $sf .'$1'. $to .'$2/g';
565     push @{ $regexpes->{$f} }, $regex;
566     warn ">>>>> $regex [sf]\n";
567     } else {
568     my $regex =
569     's/\Q'. $from .'\E/'. $to .'/g';
570     push @{ $regexpes->{$f} }, $regex;
571     warn ">>>>> $regex [global]\n";
572     }
573    
574     }
575     }
576     }
577    
578     return $regexpes;
579     }
580    
581 dpavlin 3 =head1 MEMORY USAGE
582 dpavlin 1
583 dpavlin 3 C<low_mem> options is double-edged sword. If enabled, WebPAC
584     will run on memory constraint machines (which doesn't have enough
585     physical RAM to create memory structure for whole source database).
586 dpavlin 1
587 dpavlin 3 If your machine has 512Mb or more of RAM and database is around 10000 records,
588     memory shouldn't be an issue. If you don't have enough physical RAM, you
589     might consider using virtual memory (if your operating system is handling it
590     well, like on FreeBSD or Linux) instead of dropping to L<DBM::Deep> to handle
591     parsed structure of ISIS database (this is what C<low_mem> option does).
592 dpavlin 1
593 dpavlin 3 Hitting swap at end of reading source database is probably o.k. However,
594     hitting swap before 90% will dramatically decrease performance and you will
595     be better off with C<low_mem> and using rest of availble memory for
596     operating system disk cache (Linux is particuallary good about this).
597     However, every access to database record will require disk access, so
598     generation phase will be slower 10-100 times.
599    
600     Parsed structures are essential - you just have option to trade RAM memory
601     (which is fast) for disk space (which is slow). Be sure to have planty of
602     disk space if you are using C<low_mem> and thus L<DBM::Deep>.
603    
604     However, when WebPAC is running on desktop machines (or laptops :-), it's
605     highly undesireable for system to start swapping. Using C<low_mem> option can
606     reduce WecPAC memory usage to around 64Mb for same database with lookup
607     fields and sorted indexes which stay in RAM. Performance will suffer, but
608     memory usage will really be minimal. It might be also more confortable to
609     run WebPAC reniced on those machines.
610    
611    
612     =head1 AUTHOR
613    
614     Dobrica Pavlinusic, C<< <dpavlin@rot13.org> >>
615    
616 dpavlin 1 =head1 COPYRIGHT & LICENSE
617    
618 dpavlin 599 Copyright 2005-2006 Dobrica Pavlinusic, All Rights Reserved.
619 dpavlin 1
620     This program is free software; you can redistribute it and/or modify it
621     under the same terms as Perl itself.
622    
623     =cut
624    
625     1; # End of WebPAC::Input

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