/[webpac2]/trunk/bin/isi-download-results.pl
This is repository of my old source code which isn't updated any more. Go to git.rot13.org for current projects!
ViewVC logotype

Contents of /trunk/bin/isi-download-results.pl

Parent Directory Parent Directory | Revision Log Revision Log


Revision 1335 - (show annotations)
Sat Jun 5 15:49:59 2010 UTC (13 years, 11 months ago) by dpavlin
File MIME type: text/plain
File size: 5619 byte(s)
use cited reference search for CA= query

1 #!/usr/bin/perl
2
3 use warnings;
4 use strict;
5
6 use WWW::Mechanize;
7 use Data::Dump qw(dump);
8 use File::Path;
9 use Text::Unaccent;
10
11 # Advanced search syntax:
12 # http://images.isiknowledge.com/WOK46/help/WOS/h_advanced_examples.html
13
14 our $q = 'AD=Croatia';
15 $q = 'CA=BRATKO, D';
16
17 my $range_size = 500;
18 my $overlap = 3; # between previous and this range
19
20 my $results = 0;
21 my $citations = 0;
22
23 my $cites_by_year = 0;
24
25 my $max_cites = 5000; # ISI limit to get cites
26
27 $q = unac_string( 'utf-8', join(' ', @ARGV) ) if @ARGV;
28
29 warn "QUERY: $q\n";
30
31 our $mech = WWW::Mechanize->new(
32 autocheck => 0, # it dies in reference download with it!
33 cookie_jar => undef,
34 );
35
36 our $step = 0;
37 our @ranges;
38
39 my $dir = '/tmp/isi/';
40 #rmtree $dir if -e $dir;
41 mkdir $dir unless -d $dir;
42
43 sub save_mech {
44 my $path = shift;
45 $step++;
46 my $base_path = sprintf('%s/%04d', $dir,$step);
47 $path ||= $base_path;
48 $path .= $mech->{ct} =~ m{html}i ? '.html' : '.txt';
49 $mech->save_content( $path );
50 warn "# [$step] $path ", -s $path, " ", $mech->ct, "\n";
51 open(my $dump, '>', "$base_path.dump.txt");
52 $mech->dump_all($dump);
53 }
54
55 warn "# get session";
56 $mech->get( 'http://isiknowledge.com/?DestApp=WOS' );
57 save_mech;
58
59 sub search {
60 warn "# advanced serach";
61 $mech->follow_link( url_regex => qr/AdvancedSearch/ );
62 save_mech;
63
64 warn "# cookie_jar ", dump $mech->cookie_jar;
65
66 my $q_this = $q;
67
68 if ( @ranges ) {
69 $q_this .= ' AND (' . join(' OR ', map { "PY=$_" } @{ shift @ranges } ) . ')';
70 }
71
72 warn "# submit_form search: $q_this\n";
73 $mech->submit_form(
74 fields => {
75 'value(input1)' => $q_this,
76 },
77 );
78 save_mech;
79
80 warn "# summary";
81 $mech->follow_link( url_regex => qr/summary/ );
82 save_mech;
83 }
84
85 sub get_results {
86 my $desc = shift;
87 my $from = 1;
88
89 while ( 1 ) {
90
91 my $to = $from + $range_size;
92
93 warn "# submit_form results $from - $to\n";
94
95 $mech->submit_form(
96 form_name => 'summary_output_form',
97 fields => {
98 record_select_type => 'range',
99 mark_from => $from,
100 mark_to => $to,
101 mark_id => 'WOS',
102
103 qo_fields => 'fullrecord',
104 citedref => 'citedref',
105
106 save_options => 'plain_text',
107
108 fields => 'Full',
109 format => 'save',
110 },
111 button => 'save',
112 );
113 save_mech;
114
115
116 if ( $mech->content =~ m{invalid API call} ) {
117 $mech->back;
118 last;
119 }
120
121
122 my $path = "/tmp/isi.$q.$from-$to";
123 $path .= '.' . $desc if $desc;
124
125 warn "save $from - $to into $path\n";
126 $mech->follow_link( url_regex => qr/save_file/ );
127 save_mech $path;
128
129 $from += $range_size - $overlap;
130
131 $mech->back;
132 $mech->back;
133 #save_mech;
134 }
135 }
136
137
138 sub citations {
139 warn "# citation report";
140 $mech->follow_link( url_regex => qr/search_mode=CitationReport/ );
141 save_mech;
142
143 warn "view citing articles";
144 $mech->follow_link( url_regex => qr/search_mode=TotalCitingArticles/ );
145 save_mech;
146 }
147
148 sub years {
149 my $years_url = $mech->find_link( url_regex => qr/ra_name=/ );
150 if ( ! $years_url ) {
151 warn "W: can't find ra_name link\n";
152 return;
153 }
154 $years_url = $years_url->url_abs;
155 warn "## $years_url";
156 if ( $years_url !~ s{ra_name=\w+}{ra_name=PublicationYear} ) {
157 warn "W: no ra_name in $years_url\n";
158 return;
159 }
160 warn "# refine years (hidden by javascript)";
161 # warn "http://apps.isiknowledge.com/RAMore.do?product=WOS&search_mode=TotalCitingArticles&SID=T1o6bChdN9PGP1LN1Nh&qid=3&ra_mode=more&ra_name=PublicationYear&db_id=WOS&viewType=raMore\n$years_url\n";
162 $mech->get( $years_url );
163 save_mech;
164
165 my $html = $mech->content;
166 my $years;
167 while ( $html =~ s{<label.+?PublicationYear.+?>(\d{4})\s\(([\d,]+)\)</label>}{} ) {
168 my ( $year, $count ) = ( $1, $2 );
169 $count =~ s{,}{}g;
170 $years->{$year} = $count;
171 }
172 warn "# years ",dump $years;
173 $mech->back;
174
175 my @y = sort keys %$years;
176
177 @ranges = ();
178
179 if ( $cites_by_year ) {
180 push @ranges, [ $_ ] foreach @y;
181 warn "# cites_by_year ranges ", dump @ranges;
182 return;
183 }
184
185 my $y = shift @y;
186 my $size = $years->{$y};
187
188 my $cites_range;
189 $cites_range = [$y] if $y;
190
191 foreach my $y ( @y ) {
192 if ( $size + $years->{$y} > $max_cites ) {
193 push @ranges, $cites_range;
194 warn "# cites_range $size years ",dump( $cites_range ),$/;
195
196 $cites_range = [];
197 $size = 0;
198 }
199 $size += $years->{$y};
200 push @$cites_range, $y;
201 }
202
203 if ( $cites_range ) {
204 push @ranges, $cites_range;
205 warn "# cites_range $size years ",dump( $cites_range ), " FINAL\n"
206 }
207
208 warn '# ranges ', dump @ranges;
209 @ranges = () if $#ranges == 1; # just take all
210
211 return $years;
212 }
213
214 if ( $results ) {
215 search;
216 years;
217 get_results;
218 }
219
220 if ( $citations ) {
221
222 citations;
223 years unless @ranges;
224
225 do {
226 my $part;
227 if ( @ranges ) {
228 $part .= $ranges[0]->[0] . '.';
229 search;
230 citations;
231 }
232 $part .= 'citing';
233 get_results $part;
234 } while ( @ranges );
235
236 }
237
238 if ( $q =~ m{CA=(.+)} ) {
239
240 my $CA = $1;
241
242 warn "# citated reference search";
243 $mech->follow_link( url_regex => qr/CitedReferenceSearch/ );
244 save_mech;
245
246
247 $mech->submit_form(
248 form_name => 'WOS_CitedReferenceSearch_input_form',
249 fields => {
250 'value(input1)' => $CA,
251 },
252 );
253
254 my $page = 1;
255 my $records = $1 if $mech->content =~ m/(\d+)\s+records/;
256 warn "# found $records records\n";
257 my $last_span = 'fake';
258
259 while (1) {
260 save_mech "/tmp/isi.$q.citedref.$page";
261
262 $page++;
263
264 $mech->submit_form(
265 form_name => 'summary_navigation',
266 fields => {
267 'page' => $page,
268 },
269 );
270
271 $mech->form_name( 'summary_navigation' );
272 last if $mech->value('page') < $page;
273
274 if ( $mech->content =~ m/(\d+\s*-\s*(\d+))/ ) {
275 warn "span: $1\n";
276 last if $2 == $records;
277 last if $1 == $last_span;
278 $last_span = $1;
279 } elsif ( $page > 5 ) {
280 warn "ARTIFICALLY LIMITED TO 5 PAGES WITHOUT VALID SPAN!";
281 last;
282 }
283
284 }
285
286 }
287
288 warn "OVER\n";

Properties

Name Value
svn:executable *

  ViewVC Help
Powered by ViewVC 1.1.26