/[webpac2]/trunk/bin/isi-download-results.pl
This is repository of my old source code which isn't updated any more. Go to git.rot13.org for current projects!
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Contents of /trunk/bin/isi-download-results.pl

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Revision 1334 - (show annotations)
Fri Jun 4 17:43:29 2010 UTC (13 years, 10 months ago) by dpavlin
File MIME type: text/plain
File size: 4708 byte(s)
cleanup $results and $citations options

1 #!/usr/bin/perl
2
3 use warnings;
4 use strict;
5
6 use WWW::Mechanize;
7 use Data::Dump qw(dump);
8 use File::Path;
9 use Text::Unaccent;
10
11 # Advanced search syntax:
12 # http://images.isiknowledge.com/WOK46/help/WOS/h_advanced_examples.html
13
14 our $q = 'AD=Croatia';
15 my $range_size = 500;
16 my $overlap = 3; # between previous and this range
17 my $results = 0;
18 my $citations = 0;
19 my $cites_by_year = 0;
20
21 my $max_cites = 5000; # ISI limit to get cites
22
23 if ( 0 ) {
24 $q = 'TS=psychology AND AD=Croatia';
25 $range_size = 50;
26 $overlap = 0;
27 $max_cites = 50;
28 }
29
30 $q = unac_string( 'utf-8', join(' ', @ARGV) ) if @ARGV;
31
32 our $mech = WWW::Mechanize->new(
33 autocheck => 0, # it dies in reference download with it!
34 cookie_jar => undef,
35 );
36
37 our $step = 0;
38 our @ranges;
39
40 my $dir = '/tmp/isi/';
41 #rmtree $dir if -e $dir;
42 mkdir $dir unless -d $dir;
43
44 sub save_mech {
45 my $path = shift;
46 $step++;
47 my $base_path = sprintf('%s/%04d', $dir,$step);
48 $path ||= $base_path;
49 $path .= $mech->{ct} =~ m{html}i ? '.html' : '.txt';
50 $mech->save_content( $path );
51 warn "# [$step] $path ", -s $path, " ", $mech->ct, "\n";
52 open(my $dump, '>', "$base_path.dump.txt");
53 $mech->dump_all($dump);
54 }
55
56 warn "# get session";
57 $mech->get( 'http://isiknowledge.com/?DestApp=WOS' );
58 save_mech;
59
60 sub search {
61 warn "# advanced serach";
62 $mech->follow_link( url_regex => qr/AdvancedSearch/ );
63 save_mech;
64
65 warn "# cookie_jar ", dump $mech->cookie_jar;
66
67 my $q_this = $q;
68
69 if ( @ranges ) {
70 $q_this .= ' AND (' . join(' OR ', map { "PY=$_" } @{ shift @ranges } ) . ')';
71 }
72
73 warn "# submit_form search: $q_this\n";
74 $mech->submit_form(
75 fields => {
76 'value(input1)' => $q_this,
77 },
78 );
79 save_mech;
80
81 warn "# summary";
82 $mech->follow_link( url_regex => qr/summary/ );
83 save_mech;
84 }
85
86 sub get_results {
87 my $desc = shift;
88 my $from = 1;
89
90 while ( 1 ) {
91
92 my $to = $from + $range_size;
93
94 warn "# submit_form results $from - $to\n";
95
96 $mech->submit_form(
97 form_name => 'summary_output_form',
98 fields => {
99 record_select_type => 'range',
100 mark_from => $from,
101 mark_to => $to,
102 mark_id => 'WOS',
103
104 qo_fields => 'fullrecord',
105 citedref => 'citedref',
106
107 save_options => 'plain_text',
108
109 fields => 'Full',
110 format => 'save',
111 },
112 button => 'save',
113 );
114 save_mech;
115
116
117 if ( $mech->content =~ m{invalid API call} ) {
118 $mech->back;
119 last;
120 }
121
122
123 my $path = "/tmp/isi.$q.$from-$to";
124 $path .= '.' . $desc if $desc;
125
126 warn "save $from - $to into $path\n";
127 $mech->follow_link( url_regex => qr/save_file/ );
128 save_mech $path;
129
130 $from += $range_size - $overlap;
131
132 $mech->back;
133 $mech->back;
134 #save_mech;
135 }
136 }
137
138
139 sub citations {
140 warn "# citation report";
141 $mech->follow_link( url_regex => qr/search_mode=CitationReport/ );
142 save_mech;
143
144 warn "view citing articles";
145 $mech->follow_link( url_regex => qr/search_mode=TotalCitingArticles/ );
146 save_mech;
147 }
148
149 sub years {
150 my $years_url = $mech->find_link( url_regex => qr/ra_name=/ );
151 if ( ! $years_url ) {
152 warn "W: can't find ra_name link\n";
153 return;
154 }
155 $years_url = $years_url->url_abs;
156 warn "## $years_url";
157 if ( $years_url !~ s{ra_name=\w+}{ra_name=PublicationYear} ) {
158 warn "W: no ra_name in $years_url\n";
159 return;
160 }
161 warn "# refine years (hidden by javascript)";
162 # warn "http://apps.isiknowledge.com/RAMore.do?product=WOS&search_mode=TotalCitingArticles&SID=T1o6bChdN9PGP1LN1Nh&qid=3&ra_mode=more&ra_name=PublicationYear&db_id=WOS&viewType=raMore\n$years_url\n";
163 $mech->get( $years_url );
164 save_mech;
165
166 my $html = $mech->content;
167 my $years;
168 while ( $html =~ s{<label.+?PublicationYear.+?>(\d{4})\s\(([\d,]+)\)</label>}{} ) {
169 my ( $year, $count ) = ( $1, $2 );
170 $count =~ s{,}{}g;
171 $years->{$year} = $count;
172 }
173 warn "# years ",dump $years;
174 $mech->back;
175
176 my @y = sort keys %$years;
177
178 @ranges = ();
179
180 if ( $cites_by_year ) {
181 push @ranges, [ $_ ] foreach @y;
182 warn "# cites_by_year ranges ", dump @ranges;
183 return;
184 }
185
186 my $y = shift @y;
187 my $size = $years->{$y};
188
189 my $cites_range;
190 $cites_range = [$y] if $y;
191
192 foreach my $y ( @y ) {
193 if ( $size + $years->{$y} > $max_cites ) {
194 push @ranges, $cites_range;
195 warn "# cites_range $size years ",dump( $cites_range ),$/;
196
197 $cites_range = [];
198 $size = 0;
199 }
200 $size += $years->{$y};
201 push @$cites_range, $y;
202 }
203
204 if ( $cites_range ) {
205 push @ranges, $cites_range;
206 warn "# cites_range $size years ",dump( $cites_range ), " FINAL\n"
207 }
208
209 warn '# ranges ', dump @ranges;
210 @ranges = () if $#ranges == 1; # just take all
211
212 return $years;
213 }
214
215 search;
216 years;
217 get_results 'results' if $results;
218
219 if ( $citations ) {
220
221 citations;
222
223 do {
224 my $part;
225 if ( @ranges ) {
226 $part .= $ranges[0]->[0] . '.';
227 search;
228 citations;
229 }
230 $part .= 'citing';
231 get_results $part;
232 } while ( @ranges );
233
234 }

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