/[webpac2]/trunk/bin/isi-download-results.pl
This is repository of my old source code which isn't updated any more. Go to git.rot13.org for current projects!
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Contents of /trunk/bin/isi-download-results.pl

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Revision 1333 - (show annotations)
Sat May 22 20:05:33 2010 UTC (13 years, 11 months ago) by dpavlin
File MIME type: text/plain
File size: 4660 byte(s)
turn off autocheck to pass reference download

1 #!/usr/bin/perl
2
3 use warnings;
4 use strict;
5
6 use WWW::Mechanize;
7 use Data::Dump qw(dump);
8 use File::Path;
9 use Text::Unaccent;
10
11 # Advanced search syntax:
12 # http://images.isiknowledge.com/WOK46/help/WOS/h_advanced_examples.html
13
14 our $q = 'AD=Croatia';
15 my $range_size = 500;
16 my $overlap = 3; # between previous and this range
17 my $skip_results = 1;
18 my $cites_by_year = 0;
19
20 my $max_cites = 5000; # ISI limit to get cites
21
22 if ( 0 ) {
23 $q = 'TS=psychology AND AD=Croatia';
24 $range_size = 50;
25 $overlap = 0;
26 $max_cites = 50;
27 }
28
29 $q = unac_string( 'utf-8', join(' ', @ARGV) ) if @ARGV;
30
31 our $mech = WWW::Mechanize->new(
32 autocheck => 0, # it dies in reference download with it!
33 cookie_jar => undef,
34 );
35
36 our $step = 0;
37 our @ranges;
38
39 my $dir = '/tmp/isi/';
40 #rmtree $dir if -e $dir;
41 mkdir $dir unless -d $dir;
42
43 sub save_mech {
44 my $path = shift;
45 $step++;
46 my $base_path = sprintf('%s/%04d', $dir,$step);
47 $path ||= $base_path;
48 $path .= $mech->{ct} =~ m{html}i ? '.html' : '.txt';
49 $mech->save_content( $path );
50 warn "# [$step] $path ", -s $path, " ", $mech->ct, "\n";
51 open(my $dump, '>', "$base_path.dump.txt");
52 $mech->dump_all($dump);
53 }
54
55 warn "# get session";
56 $mech->get( 'http://isiknowledge.com/?DestApp=WOS' );
57 save_mech;
58
59 sub search {
60 warn "# advanced serach";
61 $mech->follow_link( url_regex => qr/AdvancedSearch/ );
62 save_mech;
63
64 warn "# cookie_jar ", dump $mech->cookie_jar;
65
66 my $q_this = $q;
67
68 if ( @ranges ) {
69 $q_this .= ' AND (' . join(' OR ', map { "PY=$_" } @{ shift @ranges } ) . ')';
70 }
71
72 warn "# submit_form search: $q_this\n";
73 $mech->submit_form(
74 fields => {
75 'value(input1)' => $q_this,
76 },
77 );
78 save_mech;
79
80 warn "# summary";
81 $mech->follow_link( url_regex => qr/summary/ );
82 save_mech;
83 }
84
85 sub get_results {
86 my $desc = shift;
87 my $from = 1;
88
89 while ( 1 ) {
90
91 my $to = $from + $range_size;
92
93 warn "# submit_form results $from - $to\n";
94
95 $mech->submit_form(
96 form_name => 'summary_output_form',
97 fields => {
98 record_select_type => 'range',
99 mark_from => $from,
100 mark_to => $to,
101 mark_id => 'WOS',
102
103 qo_fields => 'fullrecord',
104 citedref => 'citedref',
105
106 save_options => 'plain_text',
107
108 fields => 'Full',
109 format => 'save',
110 },
111 button => 'save',
112 );
113 save_mech;
114
115
116 if ( $mech->content =~ m{invalid API call} ) {
117 $mech->back;
118 last;
119 }
120
121
122 my $path = "/tmp/isi.$q.$from-$to";
123 $path .= '.' . $desc if $desc;
124
125 warn "save $from - $to into $path\n";
126 $mech->follow_link( url_regex => qr/save_file/ );
127 save_mech $path;
128
129 $from += $range_size - $overlap;
130
131 $mech->back;
132 $mech->back;
133 #save_mech;
134 }
135 }
136
137
138 sub citations {
139 warn "# citation report";
140 $mech->follow_link( url_regex => qr/search_mode=CitationReport/ );
141 save_mech;
142
143 warn "view citing articles";
144 $mech->follow_link( url_regex => qr/search_mode=TotalCitingArticles/ );
145 save_mech;
146 }
147
148 sub years {
149 my $years_url = $mech->find_link( url_regex => qr/ra_name=/ );
150 if ( ! $years_url ) {
151 warn "W: can't find ra_name link\n";
152 return;
153 }
154 $years_url = $years_url->url_abs;
155 warn "## $years_url";
156 if ( $years_url !~ s{ra_name=\w+}{ra_name=PublicationYear} ) {
157 warn "W: no ra_name in $years_url\n";
158 return;
159 }
160 warn "# refine years (hidden by javascript)";
161 # warn "http://apps.isiknowledge.com/RAMore.do?product=WOS&search_mode=TotalCitingArticles&SID=T1o6bChdN9PGP1LN1Nh&qid=3&ra_mode=more&ra_name=PublicationYear&db_id=WOS&viewType=raMore\n$years_url\n";
162 $mech->get( $years_url );
163 save_mech;
164
165 my $html = $mech->content;
166 my $years;
167 while ( $html =~ s{<label.+?PublicationYear.+?>(\d{4})\s\(([\d,]+)\)</label>}{} ) {
168 my ( $year, $count ) = ( $1, $2 );
169 $count =~ s{,}{}g;
170 $years->{$year} = $count;
171 }
172 warn "# years ",dump $years;
173 $mech->back;
174
175 my @y = sort keys %$years;
176
177 @ranges = ();
178
179 if ( $cites_by_year ) {
180 push @ranges, [ $_ ] foreach @y;
181 warn "# cites_by_year ranges ", dump @ranges;
182 return;
183 }
184
185 my $y = shift @y;
186 my $size = $years->{$y};
187
188 my $cites_range;
189 $cites_range = [$y] if $y;
190
191 foreach my $y ( @y ) {
192 if ( $size + $years->{$y} > $max_cites ) {
193 push @ranges, $cites_range;
194 warn "# cites_range $size years ",dump( $cites_range ),$/;
195
196 $cites_range = [];
197 $size = 0;
198 }
199 $size += $years->{$y};
200 push @$cites_range, $y;
201 }
202
203 if ( $cites_range ) {
204 push @ranges, $cites_range;
205 warn "# cites_range $size years ",dump( $cites_range ), " FINAL\n"
206 }
207
208 warn '# ranges ', dump @ranges;
209 @ranges = () if $#ranges == 1; # just take all
210
211 return $years;
212 }
213
214 search;
215 years;
216 get_results unless $skip_results;
217
218
219 citations;
220
221 do {
222 my $part;
223 if ( @ranges ) {
224 $part .= $ranges[0]->[0] . '.';
225 search;
226 citations;
227 }
228 $part .= 'citing';
229 get_results $part;
230 } while ( @ranges );
231

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