/[webpac2]/trunk/bin/isi-download-results.pl
This is repository of my old source code which isn't updated any more. Go to git.rot13.org for current projects!
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Contents of /trunk/bin/isi-download-results.pl

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Revision 1292 - (show annotations)
Sat Sep 19 20:35:43 2009 UTC (14 years, 7 months ago) by dpavlin
File MIME type: text/plain
File size: 4278 byte(s)
- get citing records grouped into max_cites sized chunks using PY as criteria
- implement 10 record $overlap when getting more than $range_size (500) records
- cleanup save_mech
- fix PublictionYear extraction from html

1 #!/usr/bin/perl
2
3 use warnings;
4 use strict;
5
6 # Advanced search syntax:
7 # http://images.isiknowledge.com/WOK46/help/WOS/h_advanced_examples.html
8
9 our $q = 'AD=Croatia';
10 my $range_size = 500;
11 my $overlap = 10; # between previous and this range
12
13 $q = 'TS=psychology AND AD=Croatia' if @ARGV; # FIXME debug
14
15 my $max_cites = 5000; # ISI limit to get cites
16 our @ranges;
17
18 use WWW::Mechanize;
19 use Data::Dump qw(dump);
20 use File::Path;
21
22 our $mech = WWW::Mechanize->new(
23 autocheck => 1,
24 cookie_jar => undef,
25 );
26
27 our $step = 0;
28
29 my $dir = '/tmp/isi/';
30 rmtree $dir if -e $dir;
31 mkdir $dir;
32
33 sub save_mech {
34 my $path = shift;
35 $step++;
36 my $base_path = sprintf('%s/%04d', $dir,$step);
37 $path ||= $base_path;
38 $path .= $mech->{ct} =~ m{html}i ? '.html' : '.txt';
39 $mech->save_content( $path );
40 warn "# [$step] $path ", -s $path, " ", $mech->ct, "\n";
41 open(my $dump, '>', "$base_path.dump.txt");
42 $mech->dump_all($dump);
43 }
44
45 warn "# get session";
46 $mech->get( 'http://isiknowledge.com/?DestApp=WOS' );
47 save_mech;
48
49 sub search {
50 warn "# advanced serach";
51 $mech->follow_link( url_regex => qr/AdvancedSearch/ );
52 save_mech;
53
54 warn "# cookie_jar ", dump $mech->cookie_jar;
55
56 my $q_this = $q;
57
58 if ( @ranges ) {
59 $q_this .= ' AND (' . join(' OR ', map { "PY=$_" } @{ shift @ranges } ) . ')';
60 }
61
62 warn "# submit_form search: $q_this\n";
63 $mech->submit_form(
64 fields => {
65 'value(input1)' => $q_this,
66 },
67 );
68 save_mech;
69
70 warn "# summary";
71 $mech->follow_link( url_regex => qr/summary/ );
72 save_mech;
73 }
74
75 sub get_results {
76 my $desc = shift;
77 my $from = 1;
78
79 while ( 1 ) {
80
81 my $to = $from + $range_size;
82
83 warn "# submit_form results $from - $to\n";
84
85 $mech->submit_form(
86 form_name => 'summary_output_form',
87 fields => {
88 record_select_type => 'range',
89 mark_from => $from,
90 mark_to => $to,
91 mark_id => 'WOS',
92
93 qo_fields => 'fullrecord',
94 citedref => 'citedref',
95
96 save_options => 'plain_text',
97
98 fields => 'Full',
99 format => 'save',
100 },
101 button => 'save',
102 );
103 save_mech;
104
105
106 if ( $mech->content =~ m{invalid API call} ) {
107 $mech->back;
108 last;
109 }
110
111
112 my $path = "/tmp/isi.$q.$from-$to";
113 $path .= '.' . $desc if $desc;
114
115 warn "save $from - $to into $path\n";
116 $mech->follow_link( url_regex => qr/save_file/ );
117 save_mech $path;
118
119 $from += $range_size - $overlap;
120
121 $mech->back;
122 $mech->back;
123 #save_mech;
124 }
125 }
126
127
128 sub citations {
129 warn "# citation report";
130 $mech->follow_link( url_regex => qr/search_mode=CitationReport/ );
131 save_mech;
132
133 warn "view citing articles";
134 $mech->follow_link( url_regex => qr/search_mode=TotalCitingArticles/ );
135 save_mech;
136 }
137
138 sub years {
139 my $years_url = $mech->find_link( url_regex => qr/ra_name=/ );
140 if ( ! $years_url ) {
141 warn "W: can't find ra_name link\n";
142 return;
143 }
144 $years_url = $years_url->url_abs;
145 warn "## $years_url";
146 if ( $years_url !~ s{ra_name=\w+}{ra_name=PublicationYear} ) {
147 warn "W: no ra_name in $years_url\n";
148 return;
149 }
150 warn "# refine years (hidden by javascript)";
151 # warn "http://apps.isiknowledge.com/RAMore.do?product=WOS&search_mode=TotalCitingArticles&SID=T1o6bChdN9PGP1LN1Nh&qid=3&ra_mode=more&ra_name=PublicationYear&db_id=WOS&viewType=raMore\n$years_url\n";
152 $mech->get( $years_url );
153 save_mech;
154
155 my $html = $mech->content;
156 my $years;
157 while ( $html =~ s{<label.+?PublicationYear.+?>(\d{4})\s\(([\d,]+)\)</label>}{} ) {
158 my ( $year, $count ) = ( $1, $2 );
159 $count =~ s{,}{}g;
160 $years->{$year} = $count;
161 }
162 warn "# years ",dump $years;
163 $mech->back;
164
165 my @y = sort keys %$years;
166
167 my $y = shift @y;
168 my $size = $years->{$y};
169
170 @ranges = ();
171 my $cites_range;
172 $cites_range = [$y] if $y;
173
174 foreach my $y ( @y ) {
175 if ( $size + $years->{$y} > $max_cites ) {
176 push @ranges, $cites_range;
177 warn "# cites_range $size years ",dump( $cites_range ),$/;
178
179 $cites_range = [];
180 $size = 0;
181 }
182 $size += $years->{$y};
183 push @$cites_range, $y;
184 }
185
186 if ( $cites_range ) {
187 push @ranges, $cites_range;
188 warn "# cites_range $size years ",dump( $cites_range ), " FINAL\n"
189 }
190
191 warn '# ranges ', dump @ranges;
192 @ranges = () if $#ranges == 1; # just take all
193
194 return $years;
195 }
196
197 search;
198 years;
199 get_results;
200
201
202 citations;
203
204 do {
205 my $part;
206 if ( @ranges ) {
207 $part .= $ranges[0]->[0] . '.';
208 search;
209 }
210 $part .= 'citing';
211 get_results $part;
212 } while ( @ranges );
213

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