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package IsisDB; |
package Biblio::Isis; |
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use strict; |
use strict; |
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use Carp; |
use Carp; |
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use File::Glob qw(:globally :nocase); |
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use Data::Dumper; |
use Data::Dumper; |
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BEGIN { |
BEGIN { |
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use Exporter (); |
use Exporter (); |
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use vars qw ($VERSION @ISA @EXPORT @EXPORT_OK %EXPORT_TAGS); |
use vars qw ($VERSION @ISA @EXPORT @EXPORT_OK %EXPORT_TAGS); |
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$VERSION = 0.06; |
$VERSION = 0.11; |
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@ISA = qw (Exporter); |
@ISA = qw (Exporter); |
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#Give a hoot don't pollute, do not export more than needed by default |
#Give a hoot don't pollute, do not export more than needed by default |
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@EXPORT = qw (); |
@EXPORT = qw (); |
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=head1 NAME |
=head1 NAME |
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|
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IsisDB - Read CDS/ISIS, WinISIS and IsisMarc database |
Biblio::Isis - Read CDS/ISIS, WinISIS and IsisMarc database |
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25 |
=head1 SYNOPSIS |
=head1 SYNOPSIS |
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use IsisDB; |
use Biblio::Isis; |
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my $isis = new IsisDB( |
my $isis = new Biblio::Isis( |
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isisdb => './cds/cds', |
isisdb => './cds/cds', |
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); |
); |
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|
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for(my $mfn = 1; $mfn <= $isis->{'maxmfn'}; $mfn++) { |
for(my $mfn = 1; $mfn <= $isis->count; $mfn++) { |
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print $isis->to_ascii($mfn),"\n"; |
print $isis->to_ascii($mfn),"\n"; |
35 |
} |
} |
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|
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=head1 DESCRIPTION |
=head1 DESCRIPTION |
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|
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This module will read ISIS databases created by DOS CDS/ISIS, WinIsis or |
This module will read ISIS databases created by DOS CDS/ISIS, WinIsis or |
40 |
IsisMarc. It can be used as perl-only alternative to OpenIsis module. |
IsisMarc. It can be used as perl-only alternative to OpenIsis module which |
41 |
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seems to depriciate it's old C<XS> bindings for perl. |
42 |
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|
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It can create hash values from data in ISIS database (using C<to_hash>), |
It can create hash values from data in ISIS database (using C<to_hash>), |
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ASCII dump (using C<to_ascii>) or just hash with field names and packed |
ASCII dump (using C<to_ascii>) or just hash with field names and packed |
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It also has support for identifiers (only if ISIS database is created by |
It also has support for identifiers (only if ISIS database is created by |
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IsisMarc), see C<to_hash>. |
IsisMarc), see C<to_hash>. |
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|
|
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This will module will always be slower than OpenIsis module which use C |
This module will always be slower than OpenIsis module which use C |
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library. However, since it's written in perl, it's platform independent (so |
library. However, since it's written in perl, it's platform independent (so |
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you don't need C compiler), and can be easily modified. I hope that it |
you don't need C compiler), and can be easily modified. I hope that it |
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creates data structures which are easier to use than ones created by |
creates data structures which are easier to use than ones created by |
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|
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Open ISIS database |
Open ISIS database |
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|
84 |
my $isis = new IsisDB( |
my $isis = new Biblio::Isis( |
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isisdb => './cds/cds', |
isisdb => './cds/cds', |
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read_fdt => 1, |
read_fdt => 1, |
87 |
include_deleted => 1, |
include_deleted => 1, |
99 |
=item isisdb |
=item isisdb |
100 |
|
|
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This is full or relative path to ISIS database files which include |
This is full or relative path to ISIS database files which include |
102 |
common prefix of C<.FDT>, C<.MST>, C<.CNT>, C<.XRF> and C<.MST> files. |
common prefix of C<.MST>, and C<.XRF> and optionally C<.FDT> (if using |
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C<read_fdt> option) files. |
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In this example it uses C<./cds/cds.MST> and related files. |
In this example it uses C<./cds/cds.MST> and related files. |
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=back |
=back |
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It will also set C<$isis-E<gt>{'maxmfn'}> which is maximum MFN stored in database. |
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=cut |
=cut |
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sub new { |
sub new { |
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$self->{$v} = {@_}->{$v}; |
$self->{$v} = {@_}->{$v}; |
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} |
} |
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139 |
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my @isis_files = grep(/\.(FDT|MST|XRF|CNT)$/i,glob($self->{isisdb}."*")); |
140 |
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141 |
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foreach my $f (@isis_files) { |
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my $ext = $1 if ($f =~ m/\.(\w\w\w)$/); |
143 |
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$self->{lc($ext)."_file"} = $f; |
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} |
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146 |
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my @must_exist = qw(mst xrf); |
147 |
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push @must_exist, "fdt" if ($self->{read_fdt}); |
148 |
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149 |
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foreach my $ext (@must_exist) { |
150 |
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croak "missing ",uc($ext)," file in ",$self->{isisdb} unless ($self->{$ext."_file"}); |
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} |
152 |
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153 |
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print STDERR "## using files: ",join(" ",@isis_files),"\n" if ($self->{debug}); |
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# if you want to read .FDT file use read_fdt argument when creating class! |
# if you want to read .FDT file use read_fdt argument when creating class! |
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if ({@_}->{read_fdt} && -e $self->{isisdb}.".FDT") { |
if ($self->{read_fdt} && -e $self->{fdt_file}) { |
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# read the $db.FDT file for tags |
# read the $db.FDT file for tags |
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my $fieldzone=0; |
my $fieldzone=0; |
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161 |
open(fileFDT, $self->{isisdb}.".FDT") || croak "can't read '$self->{isisdb}.FDT': $!"; |
open(my $fileFDT, $self->{fdt_file}) || croak "can't read '$self->{fdt_file}': $!"; |
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binmode($fileFDT); |
163 |
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|
164 |
while (<fileFDT>) { |
while (<$fileFDT>) { |
165 |
chomp; |
chomp; |
166 |
if ($fieldzone) { |
if ($fieldzone) { |
167 |
my $name=substr($_,0,30); |
my $name=substr($_,0,30); |
178 |
} |
} |
179 |
} |
} |
180 |
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close(fileFDT); |
close($fileFDT); |
182 |
} |
} |
183 |
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184 |
# Get the Maximum MFN from $db.MST |
# Get the Maximum MFN from $db.MST |
185 |
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186 |
open(fileMST,$self->{isisdb}.".MST") || croak "can't read '$self->{isisdb}.MST': $!"; |
open($self->{'fileMST'}, $self->{mst_file}) || croak "can't open '$self->{mst_file}': $!"; |
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binmode($self->{'fileMST'}); |
188 |
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# MST format: (* = 32 bit signed) |
# MST format: (* = 32 bit signed) |
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# CTLMFN* always 0 |
# CTLMFN* always 0 |
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# NXTMFB* last block allocated to master file |
# NXTMFB* last block allocated to master file |
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# NXTMFP offset to next available position in last block |
# NXTMFP offset to next available position in last block |
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# MFTYPE always 0 for user db file (1 for system) |
# MFTYPE always 0 for user db file (1 for system) |
195 |
seek(fileMST,4,0); |
seek($self->{'fileMST'},4,0) || croak "can't seek to offset 0 in MST: $!"; |
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my $buff; |
my $buff; |
198 |
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199 |
read(fileMST, $buff, 4); |
read($self->{'fileMST'}, $buff, 4) || croak "can't read NXTMFN from MST: $!"; |
200 |
$self->{'NXTMFN'}=unpack("l",$buff) || carp "NXTNFN is zero"; |
$self->{'NXTMFN'}=unpack("V",$buff) || croak "NXTNFN is zero"; |
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# save maximum MFN |
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$self->{'maxmfn'} = $self->{'NXTMFN'} - 1; |
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close(fileMST); |
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201 |
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# Get the index information from $db.CNT |
print STDERR Dumper($self),"\n" if ($self->{debug}); |
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open(fileCNT, $self->{isisdb}.".CNT") || croak "can't read '$self->{isisdb}.CNT': $!"; |
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# There is two 26 Bytes fixed lenght records |
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# 0: IDTYPE BTree type 16 |
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# 2: ORDN Nodes Order 16 |
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# 4: ORDF Leafs Order 16 |
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# 6: N Number of Memory buffers for nodes 16 |
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# 8: K Number of buffers for first level index 16 |
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# 10: LIV Current number of Index Levels 16 |
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# 12: POSRX* Pointer to Root Record in N0x 32 |
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# 16: NMAXPOS* Next Available position in N0x 32 |
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# 20: FMAXPOS* Next available position in L0x 32 |
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# 24: ABNORMAL Formal BTree normality indicator 16 |
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# length: 26 bytes |
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sub unpack_cnt { |
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my $self = shift; |
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my @flds = qw(ORDN ORDF N K LIV POSRX NMAXPOS FMAXPOS ABNORMAL); |
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my $buff = shift || return; |
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my @arr = unpack("ssssssllls", $buff); |
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print STDERR "unpack_cnt: ",join(" ",@arr),"\n" if ($self->{'debug'}); |
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my $IDTYPE = shift @arr; |
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foreach (@flds) { |
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$self->{$IDTYPE}->{$_} = abs(shift @arr); |
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} |
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} |
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read(fileCNT, $buff, 26); |
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$self->unpack_cnt($buff); |
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read(fileCNT, $buff, 26); |
# open files for later |
205 |
$self->unpack_cnt($buff); |
open($self->{'fileXRF'}, $self->{xrf_file}) || croak "can't open '$self->{xrf_file}': $!"; |
206 |
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binmode($self->{'fileXRF'}); |
207 |
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208 |
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$self ? return $self : return undef; |
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} |
210 |
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close(fileCNT); |
=head2 count |
212 |
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print STDERR Dumper($self),"\n" if ($self->{debug}); |
Return number of records in database |
214 |
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# open files for later |
print $isis->count; |
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open($self->{'fileXRF'}, $self->{isisdb}.".XRF") || croak "can't open '$self->{isisdb}.XRF': $!"; |
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217 |
open($self->{'fileMST'}, $self->{isisdb}.".MST") || croak "can't open '$self->{isisdb}.MST': $!"; |
=cut |
218 |
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$self ? return $self : return undef; |
sub count { |
220 |
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my $self = shift; |
221 |
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return $self->{'NXTMFN'} - 1; |
222 |
} |
} |
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=head2 fetch |
=head2 fetch |
244 |
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# is mfn allready in memory? |
# is mfn allready in memory? |
246 |
my $old_mfn = $self->{'current_mfn'} || -1; |
my $old_mfn = $self->{'current_mfn'} || -1; |
247 |
return if ($mfn == $old_mfn); |
return $self->{record} if ($mfn == $old_mfn); |
248 |
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print STDERR "## fetch: $mfn\n" if ($self->{debug}); |
print STDERR "## fetch: $mfn\n" if ($self->{debug}); |
250 |
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# XXX check this? |
# XXX check this? |
252 |
my $mfnpos=($mfn+int(($mfn-1)/127))*4; |
my $mfnpos=($mfn+int(($mfn-1)/127))*4; |
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254 |
print STDERR "## seeking to $mfnpos in file '$self->{isisdb}.XRF'\n" if ($self->{debug}); |
print STDERR "## seeking to $mfnpos in file '$self->{xrf_file}'\n" if ($self->{debug}); |
255 |
seek($self->{'fileXRF'},$mfnpos,0); |
seek($self->{'fileXRF'},$mfnpos,0); |
256 |
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257 |
my $buff; |
my $buff; |
258 |
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259 |
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# delete old record |
260 |
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delete $self->{record}; |
261 |
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262 |
# read XRFMFB abd XRFMFP |
# read XRFMFB abd XRFMFP |
263 |
read($self->{'fileXRF'}, $buff, 4); |
read($self->{'fileXRF'}, $buff, 4); |
264 |
my $pointer=unpack("l",$buff) || carp "pointer is null"; |
my $pointer=unpack("V",$buff) || croak "pointer is null"; |
265 |
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266 |
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# check for logically deleted record |
267 |
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if ($pointer & 0x80000000) { |
268 |
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print STDERR "## record $mfn is logically deleted\n" if ($self->{debug}); |
269 |
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$self->{deleted} = $mfn; |
270 |
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271 |
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return unless $self->{include_deleted}; |
272 |
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273 |
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# abs |
274 |
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$pointer = ($pointer ^ 0xffffffff) + 1; |
275 |
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} |
276 |
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277 |
my $XRFMFB = int($pointer/2048); |
my $XRFMFB = int($pointer/2048); |
278 |
my $XRFMFP = $pointer - ($XRFMFB*2048); |
my $XRFMFP = $pointer - ($XRFMFB*2048); |
279 |
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|
280 |
# (XRFMFB - 1) * 512 + XRFMFP |
# (XRFMFB - 1) * 512 + XRFMFP |
281 |
# why do i have to do XRFMFP % 1024 ? |
# why do i have to do XRFMFP % 1024 ? |
282 |
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|
283 |
my $blk_off = (($XRFMFB - 1) * 512) + ($XRFMFP % 1024); |
my $blk_off = (($XRFMFB - 1) * 512) + ($XRFMFP % 512); |
284 |
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285 |
print STDERR "## pointer: $pointer XRFMFB: $XRFMFB XRFMFP: $XRFMFP offset: $blk_off\n" if ($self->{'debug'}); |
print STDERR "## pointer: $pointer XRFMFB: $XRFMFB XRFMFP: $XRFMFP offset: $blk_off\n" if ($self->{'debug'}); |
286 |
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287 |
# Get Record Information |
# Get Record Information |
288 |
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289 |
seek($self->{'fileMST'},$blk_off,0); |
seek($self->{'fileMST'},$blk_off,0) || croak "can't seek to $blk_off: $!"; |
290 |
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291 |
read($self->{'fileMST'}, $buff, 4); |
read($self->{'fileMST'}, $buff, 4) || croak "can't read 4 bytes at offset $blk_off from MST file: $!"; |
292 |
my $value=unpack("l",$buff); |
my $value=unpack("V",$buff); |
293 |
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294 |
print STDERR "## offset for rowid $value is $blk_off (blk $XRFMFB off $XRFMFP)\n" if ($self->{debug}); |
print STDERR "## offset for rowid $value is $blk_off (blk $XRFMFB off $XRFMFP)\n" if ($self->{debug}); |
295 |
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|
296 |
if ($value!=$mfn) { |
if ($value!=$mfn) { |
297 |
carp "Error: MFN ".$mfn." not found in MST(".$value.")"; |
if ($value == 0) { |
298 |
#return; # XXX deleted record? |
print STDERR "## record $mfn is physically deleted\n" if ($self->{debug}); |
299 |
} |
$self->{deleted} = $mfn; |
300 |
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return; |
301 |
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} |
302 |
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303 |
# $MFRL=$self->Read16($fileMST); |
carp "Error: MFN ".$mfn." not found in MST file, found $value"; |
304 |
# $MFBWB=$self->Read32($fileMST); |
return; |
305 |
# $MFBWP=$self->Read16($fileMST); |
} |
|
# $BASE=$self->Read16($fileMST); |
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# $NVF=$self->Read16($fileMST); |
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# $STATUS=$self->Read16($fileMST); |
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306 |
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307 |
read($self->{'fileMST'}, $buff, 14); |
read($self->{'fileMST'}, $buff, 14); |
308 |
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309 |
my ($MFRL,$MFBWB,$MFBWP,$BASE,$NVF,$STATUS) = unpack("slssss", $buff); |
my ($MFRL,$MFBWB,$MFBWP,$BASE,$NVF,$STATUS) = unpack("vVvvvv", $buff); |
310 |
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311 |
print STDERR "## MFRL: $MFRL MFBWB: $MFBWB MFBWP: $MFBWP BASE: $BASE NVF: $NVF STATUS: $STATUS\n" if ($self->{debug}); |
print STDERR "## MFRL: $MFRL MFBWB: $MFBWB MFBWP: $MFBWP BASE: $BASE NVF: $NVF STATUS: $STATUS\n" if ($self->{debug}); |
312 |
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313 |
# delete old record |
warn "MFRL $MFRL is not even number" unless ($MFRL % 2 == 0); |
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delete $self->{record}; |
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## FIXME this is a bug |
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if (! $self->{'include_deleted'} && $MFRL < 0) { |
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print "## logically deleted record $mfn, skipping...\n" if ($self->{debug}); |
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return; |
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} |
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314 |
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315 |
warn "BASE is not 18+6*NVF" unless ($BASE == 18 + 6 * $NVF); |
warn "BASE is not 18+6*NVF" unless ($BASE == 18 + 6 * $NVF); |
316 |
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326 |
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327 |
for (my $i = 0 ; $i < $NVF ; $i++) { |
for (my $i = 0 ; $i < $NVF ; $i++) { |
328 |
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329 |
# $TAG=$self->Read16($fileMST); |
my ($TAG,$POS,$LEN) = unpack("vvv", substr($buff,$i * 6, 6)); |
|
# $POS=$self->Read16($fileMST); |
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# $LEN=$self->Read16($fileMST); |
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my ($TAG,$POS,$LEN) = unpack("sss", substr($buff,$i * 6, 6)); |
|
330 |
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331 |
print STDERR "## TAG: $TAG POS: $POS LEN: $LEN\n" if ($self->{debug}); |
print STDERR "## TAG: $TAG POS: $POS LEN: $LEN\n" if ($self->{debug}); |
332 |
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359 |
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360 |
push @{$self->{record}->{$FieldTAG[$i]}}, substr($buff,$FieldPOS[$i],$FieldLEN[$i]); |
push @{$self->{record}->{$FieldTAG[$i]}}, substr($buff,$FieldPOS[$i],$FieldLEN[$i]); |
361 |
} |
} |
|
close(fileMST); |
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362 |
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363 |
$self->{'current_mfn'} = $mfn; |
$self->{'current_mfn'} = $mfn; |
364 |
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365 |
print Dumper($self),"\n" if ($self->{debug}); |
print STDERR Dumper($self),"\n" if ($self->{debug}); |
366 |
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|
367 |
return $self->{'record'}; |
return $self->{'record'}; |
368 |
} |
} |
369 |
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370 |
=head2 to_ascii |
=head2 to_ascii |
371 |
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|
372 |
Dump ASCII output of record with specified MFN |
Returns ASCII output of record with specified MFN |
373 |
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374 |
print $isis->to_ascii(42); |
print $isis->to_ascii(42); |
375 |
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376 |
It outputs something like this: |
This outputs something like this: |
377 |
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|
378 |
210 ^aNew York^cNew York University press^dcop. 1988 |
210 ^aNew York^cNew York University press^dcop. 1988 |
379 |
990 2140 |
990 2140 |
410 |
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|
411 |
my $hash = $isis->to_hash($mfn); |
my $hash = $isis->to_hash($mfn); |
412 |
|
|
413 |
It has ability to convert characters (using C<hash_filter> from ISIS |
It has ability to convert characters (using C<hash_filter>) from ISIS |
414 |
database before creating structures enabling character re-mapping or quick |
database before creating structures enabling character re-mapping or quick |
415 |
fix-up of data. |
fix-up of data. |
416 |
|
|
469 |
my $val; |
my $val; |
470 |
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|
471 |
# has identifiers? |
# has identifiers? |
472 |
($val->{'i1'},$val->{'i2'}) = ($1,$2) if ($l =~ s/^([01 #])([01 #])//); |
($val->{'i1'},$val->{'i2'}) = ($1,$2) if ($l =~ s/^([01 #])([01 #])\^/\^/); |
473 |
|
|
474 |
# has subfields? |
# has subfields? |
475 |
if ($l =~ m/\^/) { |
if ($l =~ m/\^/) { |
502 |
return $self->{'TagName'}->{$tag} || $tag; |
return $self->{'TagName'}->{$tag} || $tag; |
503 |
} |
} |
504 |
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505 |
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506 |
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=head2 read_cnt |
507 |
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508 |
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Read content of C<.CNT> file and return hash containing it. |
509 |
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510 |
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print Dumper($isis->read_cnt); |
511 |
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512 |
|
This function is not used by module (C<.CNT> files are not required for this |
513 |
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module to work), but it can be useful to examine your index (while debugging |
514 |
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for example). |
515 |
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516 |
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=cut |
517 |
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518 |
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sub read_cnt { |
519 |
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my $self = shift; |
520 |
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521 |
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croak "missing CNT file in ",$self->{isisdb} unless ($self->{cnt_file}); |
522 |
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523 |
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# Get the index information from $db.CNT |
524 |
|
|
525 |
|
open(my $fileCNT, $self->{cnt_file}) || croak "can't read '$self->{cnt_file}': $!"; |
526 |
|
binmode($fileCNT); |
527 |
|
|
528 |
|
my $buff; |
529 |
|
|
530 |
|
read($fileCNT, $buff, 26) || croak "can't read first table from CNT: $!"; |
531 |
|
$self->unpack_cnt($buff); |
532 |
|
|
533 |
|
read($fileCNT, $buff, 26) || croak "can't read second table from CNT: $!"; |
534 |
|
$self->unpack_cnt($buff); |
535 |
|
|
536 |
|
close($fileCNT); |
537 |
|
|
538 |
|
return $self->{cnt}; |
539 |
|
} |
540 |
|
|
541 |
|
=head2 unpack_cnt |
542 |
|
|
543 |
|
Unpack one of two 26 bytes fixed length record in C<.CNT> file. |
544 |
|
|
545 |
|
Here is definition of record: |
546 |
|
|
547 |
|
off key description size |
548 |
|
0: IDTYPE BTree type s |
549 |
|
2: ORDN Nodes Order s |
550 |
|
4: ORDF Leafs Order s |
551 |
|
6: N Number of Memory buffers for nodes s |
552 |
|
8: K Number of buffers for first level index s |
553 |
|
10: LIV Current number of Index Levels s |
554 |
|
12: POSRX Pointer to Root Record in N0x l |
555 |
|
16: NMAXPOS Next Available position in N0x l |
556 |
|
20: FMAXPOS Next available position in L0x l |
557 |
|
24: ABNORMAL Formal BTree normality indicator s |
558 |
|
length: 26 bytes |
559 |
|
|
560 |
|
This will fill C<$self> object under C<cnt> with hash. It's used by C<read_cnt>. |
561 |
|
|
562 |
|
=cut |
563 |
|
|
564 |
|
sub unpack_cnt { |
565 |
|
my $self = shift; |
566 |
|
|
567 |
|
my @flds = qw(ORDN ORDF N K LIV POSRX NMAXPOS FMAXPOS ABNORMAL); |
568 |
|
|
569 |
|
my $buff = shift || return; |
570 |
|
my @arr = unpack("vvvvvvVVVv", $buff); |
571 |
|
|
572 |
|
print STDERR "unpack_cnt: ",join(" ",@arr),"\n" if ($self->{'debug'}); |
573 |
|
|
574 |
|
my $IDTYPE = shift @arr; |
575 |
|
foreach (@flds) { |
576 |
|
$self->{cnt}->{$IDTYPE}->{$_} = abs(shift @arr); |
577 |
|
} |
578 |
|
} |
579 |
|
|
580 |
1; |
1; |
581 |
|
|
582 |
=head1 BUGS |
=head1 BUGS |
583 |
|
|
584 |
This module has been very lightly tested. Use with caution and report bugs. |
Some parts of CDS/ISIS documentation are not detailed enough to exmplain |
585 |
|
some variations in input databases which has been tested with this module. |
586 |
|
When I was in doubt, I assumed that OpenIsis's implementation was right |
587 |
|
(except for obvious bugs). |
588 |
|
|
589 |
|
However, every effort has been made to test this module with as much |
590 |
|
databases (and programs that create them) as possible. |
591 |
|
|
592 |
|
I would be very greatful for success or failure reports about usage of this |
593 |
|
module with databases from programs other than WinIsis and IsisMarc. I had |
594 |
|
tested this against ouput of one C<isis.dll>-based application, but I don't |
595 |
|
know any details about it's version. |
596 |
|
|
597 |
=head1 AUTHOR |
=head1 AUTHOR |
598 |
|
|